Scaffold Ga0222718_10000409

Overview

Basic Information

• Taxon OID: 3300021958
• Scaffold ID: Ga0222718_10000409
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 44780
• Total Scaffold Genes: 65
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 59 (90.77%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.6183
  • Long. (^o): -122.2916
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021210	Metagenome / Metatranscriptome	220	Y
F027356	Metagenome / Metatranscriptome	195	Y
F027832	Metagenome / Metatranscriptome	193	N
F051561	Metagenome / Metatranscriptome	144	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222718_1000040948	F021210	AGGCGG	MSKVPYVERPLGWQGAGVGLTGECAYVWALFLANEADMEDDTFEYSKWKSMADDLAPKQGKPVAAAVYYADLEEAMKKYATREYVYPGSDPQE
Ga0222718_1000040961	F027832	GGAGG	MKGTSDRTSLGVTLIPPFRLLGYIMARKKQLQIAIGPIEHVPSEKDRSYNELVCSICHCEFDIELEGGIDGYLGVLPVAMCAMCYSGLDEFFTQLHGCYDDEHDGYEDHNED
Ga0222718_1000040962	F027356	GAGG	MKINDIHMNDRGKPVDRFDLEDAIMKAWHTTDDIKAFYTSAEHMNEDQVINALIGLEIFAEMRFNELWNTFEQCIQNGVFNDDAKRADKITKALDEATEGFGQEQI
Ga0222718_1000040964	F051561	GAGG	MSIDFDEEFDLLKALREAQALEMVEEIDNGWQTKVVPDALAQRAAKEIVDLRQQVNELRNKLADKLID