Scaffold Ga0222718_10000170

Overview

Basic Information

• Taxon OID: 3300021958
• Scaffold ID: Ga0222718_10000170
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 64338
• Total Scaffold Genes: 106
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 56 (52.83%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.6183
  • Long. (^o): -122.2916
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000379	Metagenome / Metatranscriptome	1211	Y
F013960	Metagenome / Metatranscriptome	267	N
F057761	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222718_1000017034	F000379	AGGAGG	MLNKIDYTNKHGIMVGYIDASSNVVAIETGWNISYTAMAQILLNKYPTKEDAIKAVDSPALMPTFRKDDYWYVDGFGDVIESNLSWNKEEMRKNVGHLFLFMKGTWQYSDNGIDWEPATELLKEVA
Ga0222718_1000017041	F013960	N/A	MNKGEVKMYKRDDYYYSRIQPILLMKEMDKNYQVETDLVRSIMKECISEMIVRTRHELAVANECLWSLNDRDEEYGFSHSDRVHEIRNIIETTDFERKFLQAETELVTINRLTECPKNDTVRQYMKMNDKLAEGMVA
Ga0222718_1000017052	F057761	N/A	MVVGYENIDLSPWSGPPYNYSVKVNGKFKRMMGFDEEHIRNQLAPRKPKIIKRIKDDQ