Scaffold Ga0222718_10000056

Overview

Basic Information

• Taxon OID: 3300021958
• Scaffold ID: Ga0222718_10000056
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 117744
• Total Scaffold Genes: 178
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (17.42%)
• Novel Protein Genes: 21
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (14.29%)
• Associated Families: 21

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.6183
  • Long. (^o): -122.2916
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002033	Metagenome / Metatranscriptome	601	Y
F004370	Metagenome / Metatranscriptome	441	Y
F007692	Metagenome / Metatranscriptome	346	Y
F008425	Metagenome / Metatranscriptome	333	Y
F008563	Metagenome / Metatranscriptome	331	Y
F018717	Metagenome / Metatranscriptome	233	Y
F029449	Metagenome / Metatranscriptome	188	N
F034539	Metagenome / Metatranscriptome	174	Y
F035780	Metagenome / Metatranscriptome	171	Y
F040126	Metagenome / Metatranscriptome	162	N
F041804	Metagenome / Metatranscriptome	159	Y
F045679	Metagenome / Metatranscriptome	152	Y
F049672	Metagenome / Metatranscriptome	146	Y
F051536	Metagenome / Metatranscriptome	144	Y
F051960	Metagenome / Metatranscriptome	143	N
F052947	Metagenome / Metatranscriptome	142	Y
F054413	Metagenome / Metatranscriptome	140	N
F057746	Metagenome / Metatranscriptome	136	N
F059863	Metagenome / Metatranscriptome	133	Y
F095562	Metagenome / Metatranscriptome	105	N
F100883	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222718_1000005611	F040126	N/A	MKKVPLFEDFIPVGFGGSNAANFGLGGGYKETGYNMDAIVGPVEQCSNHVAEQANSYESNDNPEHTAESYIKEAKKHINDKIDEACENYSMSESTLNEGTDISSWNQAGIKGDANAQITTFVGPKDIEDFGLGRKCMQINIGRNYVQLNPADIVELKELLKNYKV
Ga0222718_10000056118	F029449	N/A	MSNIIPGVPTPSDPQCALTYCGRIIAQVDCIKYIMQGTTACIDIQLFGADDLPLNLNNFCDIQIQLTNELECVVANFWWPDIPSGSKGFLIDILQFTDTSGVIHNEGLIRICLSAACTKATSPGGISAEILLTECPGGNTGEPTGYGPTGAFPTGTAEVFGIPCLWVATILESKIAKNGGDSGCGNSSGFVTGVI
Ga0222718_1000005612	F049672	N/A	MIPKFNNYLNEASDYEFKPNEAAARLKAREKENIQRYRAAQDRGDNYAIALYELKIKMDKIDLEGLKVQTAIHDLKNKFGK
Ga0222718_10000056120	F002033	N/A	MSKFNKFFADHGIKIVVVLVLLSYFKSCSVDSEVERIKKEQRILTTEIDTLSSQIVNEEEMIYLIKTVPAWKTLRIEEISDKERISINALEEKDN
Ga0222718_10000056124	F095562	AGGA	MEQTDDPNILRKQVEGIEKEVKNLEKEKEEIQNDCKHKGDTFVQFDESNSMKKYCSICKRELGYPTQEESNKFLGNK
Ga0222718_10000056157	F051536	N/A	MMLIDNTFELGIPTHISFTLFKYDYFDSILISRVKKECKNLSKVDGEYLVKKESFLTAIKTSKRVHSIIKKAEDFGYILNPAVKPNSIYFLCSIFNRLPNLEFLTIKISDDKKYSRLVKNEAGRSILSFHFSILEGIFDLTKLLDRKELDIFNKTLIDFEILKNKYLERKPYFYMKATAIIDILTSMDINGKLSTFHMLDHIDQKLEEDDPILIVKTDYTPY
Ga0222718_10000056161	F052947	N/A	MRSQFLETLIKKFPNHMELGSAVARYYDLRQSKLTKEECEEIVLNSFFRFN
Ga0222718_10000056164	F004370	N/A	MYRVRKINFGWYKRRHGILLENLPPLKRKLLLENNHMKWLDSDVDAFEIIFKVEDMNEHEKNPNRILWNPFRETFTNIKELEKDSDIVDWNCAVCKVEIKSRMDSKKVENFVCKKCSEAHNSRNKRVDKRIIDSSVRFLKHCKSLLKGEQREFMTYVRRSSKA
Ga0222718_10000056169	F057746	N/A	MAIVGSFQEDLDIYLADYKGRSGASKQSDKDLINIGSTAKGILDNGKMYSFEYFTPDETFYDTFPIVLGLGQSDNNHQLGLNLHYIPYETRIPFLSDIVRSFKNVITTSVNKAPGNPAAQSRLSEFTYENLKKSLGRKYNITYAIRQYRMDRIRKQRMLGYEDWYIGAVNNQNHFFGGNINEAQALYYKNI
Ga0222718_10000056178	F034539	AGAAG	MLKKNLNTAKLKVKHVLGNHTTLPNYPDAEDITYELIRDYCGKVAKEIKFTNVSLQKKYSLSDEKVNSILMQLRNDKIIKVSLSNSAYTTYEVIVNPYE
Ga0222718_100000562	F041804	N/A	LVIEALTFKLSLDFFVYLKKYKIEVSKIRIGFYDQASAKTEFTDFSSIAEMELFYQSNYVPFDNCLVGDLVSIELFLGASDLYDFITEYRAEDLTDKFKLTSGSSFDIQRNSQRSVFTNRQIAFINRAVEDYRKYWNELYRIYTTGIYSPCYAQPGWSQGTWYLHQLRGVLTSRNNEDKFPYDDATIINEPPE
Ga0222718_1000005627	F045679	N/A	MSKVKTITISGKVSEYNVKYTKAYVAKIISAQSDLYQELIPESLPYNAVKEIYVDGILEAELIGTNLLYVQKGPKHDPYVDRHKPNEEFDESHALDMVLNDMIESMTEEELAEFYSEIQNKPTEGIYLQSVTAPPPYWVTDTTAGNVNISYTN
Ga0222718_1000005630	F018717	N/A	MKITVEHYDEKVSIERENDDLSFTEFMELVRKVAHGVGYANGTVDEWFNQDI
Ga0222718_1000005635	F035780	N/A	MSYTIEVKGKDEVWWATTNEYDLEVDGENLSVRIAENPKSTEFFVWNESTGWEEADIDEGVMAIVYEAWSNGELD
Ga0222718_1000005636	F059863	N/A	MTKVELKVGDKVSWIRPMTCVPHPEGKTDRNGEVLPVFRDKLEKGRVIGTNANGYSIRPDWAEQYKDAICGERYYDKTVSMTNETLKKI
Ga0222718_1000005642	F054413	N/A	MAKLKKKYSRSKSELLKSLKIIPRQSVVLSIEVIETSKIKDHLIYECVYLDNNVEKQINIIATDITEAMQKLEPYVGAGIPDTTTNLILGSERYTNIPLDPPV
Ga0222718_1000005644	F007692	N/A	MRSITTLSQSAFDVKKAEAINNQLMRKEISLSEFNVIDNNHIELDGVKIEVTDKAFGKLLGRLRIPKAFATRFSEGFGNDGLRQLITMMKSMKSSKNDQTVTLLVDPNSRKITDILPAGYASISQESFIDFASRYIDQYNLGVTHMGSSQYGGTQINCVSPQGMFNVPGMQNEVFNTGVTFRNTPTRGLEVSPYLERLICSNGMTSTAFAENYGLHNLNDKNINEFNEHMIRMASTNFQPVGLAENITKANNTDASLAEMQRAASSILSLDKAVDYDYVQKYIPVERAFKAYSQLGADPNTFTKAQMKNAKSGMSVWDLVNGMTNFASNDTKFNINEGKMGNLMVTAGNILCKKQYDTEGVLDINPFASRDLLTTSEAAMVRGEA
Ga0222718_1000005667	F008563	N/A	MTKKYKIESHMGIAFSIIGGQKYLFPGWIPVEDHISFDDVEVINPYRNIKRETFEVLGSTGNKYTVTKNGNRLSCDCPAGKFRGTCKHSKKIAAELELA
Ga0222718_1000005669	F100883	AGAAGG	MNFHNIIFKREDELGGFRSRTHFTNGFSLSVSAGMGIYCNPREDRSSVNQFLTFEIAVFDADDNFITKTFFPDHHDDVVGWLSRDEINDLMDRITNHGNPQKDIPGFEGTLDQLNNLKIR
Ga0222718_100000569	F008425	N/A	MKKDKDITYKQFIAHMDKGNRVYMKKPRSWQKVWFWWESKREKWFLNKAYDKREDGKVITEPSVWITAKQMESHMSFMFRQGYKYYIDE
Ga0222718_1000005693	F051960	N/A	MSKETETKVVEMTTEKAPKTIKELKAKESQLDKINEDLIKEMQEREYEIDFKTKKVFDRLLKFLEKDAPWGHTTATGLIMLYHNLREAKELVKEKEFNGLIPVRSTSVTILWQMVTKMTGNGFYEAKTFVELMANVGESLSAAVQKVQDDNQALRDNHSALAKVQQEISELEAQASVEGPSAK