NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222718_10000056

Scaffold Ga0222718_10000056


Overview

Basic Information
Taxon OID3300021958 Open in IMG/M
Scaffold IDGa0222718_10000056 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)117744
Total Scaffold Genes178 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)31 (17.42%)
Novel Protein Genes21 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (14.29%)
Associated Families21

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.6183Long. (o)-122.2916Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002033Metagenome / Metatranscriptome601Y
F004370Metagenome / Metatranscriptome441Y
F007692Metagenome / Metatranscriptome346Y
F008425Metagenome / Metatranscriptome333Y
F008563Metagenome / Metatranscriptome331Y
F018717Metagenome / Metatranscriptome233Y
F029449Metagenome / Metatranscriptome188N
F034539Metagenome / Metatranscriptome174Y
F035780Metagenome / Metatranscriptome171Y
F040126Metagenome / Metatranscriptome162N
F041804Metagenome / Metatranscriptome159Y
F045679Metagenome / Metatranscriptome152Y
F049672Metagenome / Metatranscriptome146Y
F051536Metagenome / Metatranscriptome144Y
F051960Metagenome / Metatranscriptome143N
F052947Metagenome / Metatranscriptome142Y
F054413Metagenome / Metatranscriptome140N
F057746Metagenome / Metatranscriptome136N
F059863Metagenome / Metatranscriptome133Y
F095562Metagenome / Metatranscriptome105N
F100883Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0222718_1000005611F040126N/AMKKVPLFEDFIPVGFGGSNAANFGLGGGYKETGYNMDAIVGPVEQCSNHVAEQANSYESNDNPEHTAESYIKEAKKHINDKIDEACENYSMSESTLNEGTDISSWNQAGIKGDANAQITTFVGPKDIEDFGLGRKCMQINIGRNYVQLNPADIVELKELLKNYKV
Ga0222718_10000056118F029449N/AMSNIIPGVPTPSDPQCALTYCGRIIAQVDCIKYIMQGTTACIDIQLFGADDLPLNLNNFCDIQIQLTNELECVVANFWWPDIPSGSKGFLIDILQFTDTSGVIHNEGLIRICLSAACTKATSPGGISAEILLTECPGGNTGEPTGYGPTGAFPTGTAEVFGIPCLWVATILESKIAKNGGDSGCGNSSGFVTGVI
Ga0222718_1000005612F049672N/AMIPKFNNYLNEASDYEFKPNEAAARLKAREKENIQRYRAAQDRGDNYAIALYELKIKMDKIDLEGLKVQTAIHDLKNKFGK
Ga0222718_10000056120F002033N/AMSKFNKFFADHGIKIVVVLVLLSYFKSCSVDSEVERIKKEQRILTTEIDTLSSQIVNEEEMIYLIKTVPAWKTLRIEEISDKERISINALEEKDN
Ga0222718_10000056124F095562AGGAMEQTDDPNILRKQVEGIEKEVKNLEKEKEEIQNDCKHKGDTFVQFDESNSMKKYCSICKRELGYPTQEESNKFLGNK
Ga0222718_10000056157F051536N/AMMLIDNTFELGIPTHISFTLFKYDYFDSILISRVKKECKNLSKVDGEYLVKKESFLTAIKTSKRVHSIIKKAEDFGYILNPAVKPNSIYFLCSIFNRLPNLEFLTIKISDDKKYSRLVKNEAGRSILSFHFSILEGIFDLTKLLDRKELDIFNKTLIDFEILKNKYLERKPYFYMKATAIIDILTSMDINGKLSTFHMLDHIDQKLEEDDPILIVKTDYTPY
Ga0222718_10000056161F052947N/AMRSQFLETLIKKFPNHMELGSAVARYYDLRQSKLTKEECEEIVLNSFFRFN
Ga0222718_10000056164F004370N/AMYRVRKINFGWYKRRHGILLENLPPLKRKLLLENNHMKWLDSDVDAFEIIFKVEDMNEHEKNPNRILWNPFRETFTNIKELEKDSDIVDWNCAVCKVEIKSRMDSKKVENFVCKKCSEAHNSRNKRVDKRIIDSSVRFLKHCKSLLKGEQREFMTYVRRSSKA
Ga0222718_10000056169F057746N/AMAIVGSFQEDLDIYLADYKGRSGASKQSDKDLINIGSTAKGILDNGKMYSFEYFTPDETFYDTFPIVLGLGQSDNNHQLGLNLHYIPYETRIPFLSDIVRSFKNVITTSVNKAPGNPAAQSRLSEFTYENLKKSLGRKYNITYAIRQYRMDRIRKQRMLGYEDWYIGAVNNQNHFFGGNINEAQALYYKNI
Ga0222718_10000056178F034539AGAAGMLKKNLNTAKLKVKHVLGNHTTLPNYPDAEDITYELIRDYCGKVAKEIKFTNVSLQKKYSLSDEKVNSILMQLRNDKIIKVSLSNSAYTTYEVIVNPYE
Ga0222718_100000562F041804N/ALVIEALTFKLSLDFFVYLKKYKIEVSKIRIGFYDQASAKTEFTDFSSIAEMELFYQSNYVPFDNCLVGDLVSIELFLGASDLYDFITEYRAEDLTDKFKLTSGSSFDIQRNSQRSVFTNRQIAFINRAVEDYRKYWNELYRIYTTGIYSPCYAQPGWSQGTWYLHQLRGVLTSRNNEDKFPYDDATIINEPPE
Ga0222718_1000005627F045679N/AMSKVKTITISGKVSEYNVKYTKAYVAKIISAQSDLYQELIPESLPYNAVKEIYVDGILEAELIGTNLLYVQKGPKHDPYVDRHKPNEEFDESHALDMVLNDMIESMTEEELAEFYSEIQNKPTEGIYLQSVTAPPPYWVTDTTAGNVNISYTN
Ga0222718_1000005630F018717N/AMKITVEHYDEKVSIERENDDLSFTEFMELVRKVAHGVGYANGTVDEWFNQDI
Ga0222718_1000005635F035780N/AMSYTIEVKGKDEVWWATTNEYDLEVDGENLSVRIAENPKSTEFFVWNESTGWEEADIDEGVMAIVYEAWSNGELD
Ga0222718_1000005636F059863N/AMTKVELKVGDKVSWIRPMTCVPHPEGKTDRNGEVLPVFRDKLEKGRVIGTNANGYSIRPDWAEQYKDAICGERYYDKTVSMTNETLKKI
Ga0222718_1000005642F054413N/AMAKLKKKYSRSKSELLKSLKIIPRQSVVLSIEVIETSKIKDHLIYECVYLDNNVEKQINIIATDITEAMQKLEPYVGAGIPDTTTNLILGSERYTNIPLDPPV
Ga0222718_1000005644F007692N/AMRSITTLSQSAFDVKKAEAINNQLMRKEISLSEFNVIDNNHIELDGVKIEVTDKAFGKLLGRLRIPKAFATRFSEGFGNDGLRQLITMMKSMKSSKNDQTVTLLVDPNSRKITDILPAGYASISQESFIDFASRYIDQYNLGVTHMGSSQYGGTQINCVSPQGMFNVPGMQNEVFNTGVTFRNTPTRGLEVSPYLERLICSNGMTSTAFAENYGLHNLNDKNINEFNEHMIRMASTNFQPVGLAENITKANNTDASLAEMQRAASSILSLDKAVDYDYVQKYIPVERAFKAYSQLGADPNTFTKAQMKNAKSGMSVWDLVNGMTNFASNDTKFNINEGKMGNLMVTAGNILCKKQYDTEGVLDINPFASRDLLTTSEAAMVRGEA
Ga0222718_1000005667F008563N/AMTKKYKIESHMGIAFSIIGGQKYLFPGWIPVEDHISFDDVEVINPYRNIKRETFEVLGSTGNKYTVTKNGNRLSCDCPAGKFRGTCKHSKKIAAELELA
Ga0222718_1000005669F100883AGAAGGMNFHNIIFKREDELGGFRSRTHFTNGFSLSVSAGMGIYCNPREDRSSVNQFLTFEIAVFDADDNFITKTFFPDHHDDVVGWLSRDEINDLMDRITNHGNPQKDIPGFEGTLDQLNNLKIR
Ga0222718_100000569F008425N/AMKKDKDITYKQFIAHMDKGNRVYMKKPRSWQKVWFWWESKREKWFLNKAYDKREDGKVITEPSVWITAKQMESHMSFMFRQGYKYYIDE
Ga0222718_1000005693F051960N/AMSKETETKVVEMTTEKAPKTIKELKAKESQLDKINEDLIKEMQEREYEIDFKTKKVFDRLLKFLEKDAPWGHTTATGLIMLYHNLREAKELVKEKEFNGLIPVRSTSVTILWQMVTKMTGNGFYEAKTFVELMANVGESLSAAVQKVQDDNQALRDNHSALAKVQQEISELEAQASVEGPSAK

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