Scaffold Ga0222717_10051253

Overview

Basic Information

• Taxon OID: 3300021957
• Scaffold ID: Ga0222717_10051253
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2674
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.0966
  • Long. (^o): -122.4216
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010571	Metagenome	302	Y
F021404	Metagenome	219	Y
F022084	Metagenome	216	Y
F059441	Metagenome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222717_100512531	F021404	GAGG	MTYKINDKINYFFKGDEDNEPCNDVMIVKALKDLDNEEVFKLKPTANNKNVLVKGDYDKSTGKYFATKWHDINNETLKDGNTLVFTGFIF
Ga0222717_100512532	F022084	GAGG	MTHRQYLKELFKLIESKGYTVDIECEGEPITKDEALTQVDECVIYVIDKEGYSNGWIHWTFWNDWDESIVDYTVKLDDLINLDSFMSLYNN
Ga0222717_100512536	F010571	AGGAGG	MSNITNENYMQKLYEDLYEKHYQELSTISDDVEWIEDEAERLAEIDLDNFEMEG
Ga0222717_100512537	F059441	GGAGG	MKTWSSTITYSVFDMGRDCETEEDYIEWVKETFREDHNIELRDDEITNIQREELYYE