Scaffold Ga0222717_10026600

Overview

Basic Information

• Taxon OID: 3300021957
• Scaffold ID: Ga0222717_10026600
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3842
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (64.29%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.0966
  • Long. (^o): -122.4216
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008882	Metagenome / Metatranscriptome	326	N
F013295	Metagenome	272	N
F019728	Metagenome	228	Y
F038638	Metagenome / Metatranscriptome	165	Y
F079942	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222717_100266001	F038638	N/A	MSYKVSYEIAEYKYINHMKETYSLGGDLEYPSRTHSRQDTEGNWLLISEQGLKMGKVFKNGDIIA
Ga0222717_100266003	F079942	GGGGG	MSIIYVVIDEFHGIIDDVNVYKNKPKNLKTISEDERQRCFTLEIKESTNE
Ga0222717_100266006	F013295	AGGAG	MKINNLTPKQFARREIIKYLRDLFDNPAKYIKDFDSYTHRQQEEILRFISLDEHRIDKLLNLPMGES
Ga0222717_100266007	F019728	N/A	MITKKELEKNNWTVVPKGVWFGVDFAESHKVNVLDVLTDLLDLDTDADGYNFVVCAYKKEESNNENK
Ga0222717_100266008	F008882	GAGG	MSIKRYNFSKPKINRQELELLNWFLAHTNDNPLINPQALELFKANGYSAKNYQDLVNKVKTILKTYKTKGKNDN