Basic Information | |
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Taxon OID | 3300021957 Open in IMG/M |
Scaffold ID | Ga0222717_10013993 Open in IMG/M |
Source Dataset Name | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5490 |
Total Scaffold Genes | 18 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (66.67%) |
Novel Protein Genes | 8 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (62.50%) |
Associated Families | 8 |
Taxonomy | |
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All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: California | |||||||
Coordinates | Lat. (o) | 37.0966 | Long. (o) | -122.4216 | Alt. (m) | Depth (m) | 38 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F005611 | Metagenome | 395 | Y |
F006282 | Metagenome / Metatranscriptome | 377 | Y |
F008684 | Metagenome | 329 | Y |
F019923 | Metagenome | 227 | N |
F024922 | Metagenome | 204 | Y |
F025409 | Metagenome | 202 | N |
F068594 | Metagenome | 124 | Y |
F073762 | Metagenome | 120 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0222717_1001399312 | F073762 | N/A | MTKITLNKLVKIINKENEPPESWTPEAKEGAKYFTNLGHSLNDLDDGGDMAEEFNRIMNLDSDLYK |
Ga0222717_1001399314 | F019923 | GAGG | MSVDFEALDHVRAENKARVHEERKQMRVELAEYINKCDSYELSRLYDEYKRLRKK |
Ga0222717_1001399315 | F024922 | N/A | MNCQGYMMSTNDLEKNRLLNKKDFDCFFDGHNEYDFKKMSINKLRSTYGVTHLINGKYKDMRGNCFKCLTPLRADYTRHENYCLDC |
Ga0222717_100139935 | F008684 | AGGAG | MTDKNFELACELADDLYFKFIDSLHDDIANEYVVADKDNIGSTKNTDKGSDLYWEIENTIKQTLDKQGG |
Ga0222717_100139936 | F005611 | GAGG | MKKYKVRAEETIYAIYETEIEAKDKKQAEKIALDTCASDYLSSDWSNSAGDFTIEDIEEI |
Ga0222717_100139937 | F068594 | GAGG | MKEYTFWQEVKKYVREECTIKANSLDEALEIHNDGGADYKEVHCFDEEITDEGTDEKI |
Ga0222717_100139938 | F006282 | AGAAGG | MTENETLKNRIAELSKQNTLLADHLASMCCQADEDTPSEYRTKHFRSTMDDAYEYLEKIGYFKRGK |
Ga0222717_100139939 | F025409 | N/A | MNMKKVKTEKYQGYTIEVYEQEPNVEYPLNDNDWDNLDPDCLGTHAYRVFDKDNELIYEDKTHMWDIGACLENAKLDLDMDIKEQASEQKG |
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