NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222717_10013993

Scaffold Ga0222717_10013993


Overview

Basic Information
Taxon OID3300021957 Open in IMG/M
Scaffold IDGa0222717_10013993 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5490
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (66.67%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Associated Families8

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.0966Long. (o)-122.4216Alt. (m)Depth (m)38
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005611Metagenome395Y
F006282Metagenome / Metatranscriptome377Y
F008684Metagenome329Y
F019923Metagenome227N
F024922Metagenome204Y
F025409Metagenome202N
F068594Metagenome124Y
F073762Metagenome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0222717_1001399312F073762N/AMTKITLNKLVKIINKENEPPESWTPEAKEGAKYFTNLGHSLNDLDDGGDMAEEFNRIMNLDSDLYK
Ga0222717_1001399314F019923GAGGMSVDFEALDHVRAENKARVHEERKQMRVELAEYINKCDSYELSRLYDEYKRLRKK
Ga0222717_1001399315F024922N/AMNCQGYMMSTNDLEKNRLLNKKDFDCFFDGHNEYDFKKMSINKLRSTYGVTHLINGKYKDMRGNCFKCLTPLRADYTRHENYCLDC
Ga0222717_100139935F008684AGGAGMTDKNFELACELADDLYFKFIDSLHDDIANEYVVADKDNIGSTKNTDKGSDLYWEIENTIKQTLDKQGG
Ga0222717_100139936F005611GAGGMKKYKVRAEETIYAIYETEIEAKDKKQAEKIALDTCASDYLSSDWSNSAGDFTIEDIEEI
Ga0222717_100139937F068594GAGGMKEYTFWQEVKKYVREECTIKANSLDEALEIHNDGGADYKEVHCFDEEITDEGTDEKI
Ga0222717_100139938F006282AGAAGGMTENETLKNRIAELSKQNTLLADHLASMCCQADEDTPSEYRTKHFRSTMDDAYEYLEKIGYFKRGK
Ga0222717_100139939F025409N/AMNMKKVKTEKYQGYTIEVYEQEPNVEYPLNDNDWDNLDPDCLGTHAYRVFDKDNELIYEDKTHMWDIGACLENAKLDLDMDIKEQASEQKG

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