Scaffold Ga0222717_10007216

Overview

Basic Information

• Taxon OID: 3300021957
• Scaffold ID: Ga0222717_10007216
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7902
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (36.84%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.0966
  • Long. (^o): -122.4216
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007366	Metagenome	352	N
F011489	Metagenome	290	N
F013089	Metagenome	274	N
F023580	Metagenome	209	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222717_1000721611	F023580	AGG	MNNIKLFLVRNYGSTLVAAETLDVTPNTVRNWCGRSPRNILKHLPEISESCGATYAEIVEEVLICEREGVE
Ga0222717_1000721613	F013089	N/A	MTSQQTSEMKTRNSTASSLNLKNPSAERGRNKPLKPKKMGQSKIKTIQPNGTYDSQNGLMYKFEIQLESGDSGEVSAKSQDRWSIGDEVEFEVTPSKWGDRMKLTKPGFTPNQSKANNPDIQKRIDASWAIGHAINQESDPEKILEAAEFLLSIRATLISKL
Ga0222717_1000721617	F007366	N/A	MRGTPLKETKLGQWFKTKAPKVFDLIGEIVPGADALKAISALIDNTETSNEEKIKAKLLMEEIASADRANARNREIEITKSLGQRDWMQVFVGSAAMIIGIVMVVWAKTGVEDKEIFFHILGFAEGTLVGQVVNYYFGSAKN
Ga0222717_100072167	F011489	AGG	MNSGSRKGWNSFLTKHYSKLVRIARRWTDSPSDLVHHTYLRCIDKRFPDGENDNPLGYFVKAMYTEATRGKFKDLYHVTDADPKEQTFESDWTKAIQREQMQLILDRLSWFDRTIFSLYLQGWNMADVSRRSGVGESTLYRSLHITRKILKDVLRNGSKED