Scaffold Ga0222717_10001605

Overview

Basic Information

• Taxon OID: 3300021957
• Scaffold ID: Ga0222717_10001605
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18286
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (29.03%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.0966
  • Long. (^o): -122.4216
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032273	Metagenome / Metatranscriptome	180	Y
F037475	Metagenome	168	Y
F053637	Metagenome / Metatranscriptome	141	N
F064580	Metagenome / Metatranscriptome	128	Y
F098229	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222717_1000160515	F064580	N/A	MNNEIVTQVSIKSNTRLDWNPIYNSIKVEPNDEAAGSYLKITGEDEQNKGASISLNWEEWDTLVEVVEKYRKDWEWK
Ga0222717_1000160516	F037475	N/A	MTAIETKYLPATDTCGARIKATAGGMHASVPFDYSLGEIELHFEAAKGLVSKHSLEWDISTMVYGGTDKGYTFCFPKSIIKA
Ga0222717_1000160519	F032273	AGGAGG	MGKGCAPRKGHNAAKQRKNYDEIDWSKKPAVQKINKAAKSK
Ga0222717_1000160522	F053637	N/A	MNEPEDDITLDPEWISEQVNRLAGWEYLNRQVRHKLDKPMLPQELCDRIGVHKGYIYEMTKSVKKKLNAK
Ga0222717_100016057	F098229	N/A	MIFEIRYKNASMPEGYIGKCIKHAHTKEQALKYFSPKKPDKQGWTRTKHKAQVQILSVNEIPTEYEDA