Scaffold Ga0222717_10001411

Overview

Basic Information

• Taxon OID: 3300021957
• Scaffold ID: Ga0222717_10001411
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19673
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.0966
  • Long. (^o): -122.4216
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040106	Metagenome / Metatranscriptome	162	N
F042905	Metagenome / Metatranscriptome	157	N
F042906	Metagenome / Metatranscriptome	157	Y
F094928	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222717_1000141110	F042906	N/A	MTTETQTKPVSAVKIQLDVLDGCHHKCPGCFVHRRGNSSDKSQLYIAKEFIRDITDKGILVDEMLIGPTDFLASENFYEVMPELVDIINENSPILAFVSTLIDGDIERFCKYITDNINFDTEIEIGIATNPHKFFNEDYIQHVSDILKYIDKNLQHEVTYTFVVNIKDYGLDYEALHDQAVKRFDTILDFIPSVSRSHKANIILKTLDEFNEYFSTWHRESKLNNIMVDHSHAGMNYTVLNYKRGDWYLSPFMYENMAIYDDMFKIKSFDDVVPMIEQQIERAKGTECEDCPLFFSCYNRKIVMLRDYLGVDRCIAPKENMLNNIHNYNEPAQTMYQWDGYSVENDKQGYRKKFLVTTDDDPELERIKDISYVK
Ga0222717_100014114	F094928	GAGG	MASYATLNNNLQSQCGSQLRTFDKSVGYYINAYVYSDVYNGSYTRGQWHYQRYEYVNASNGVYNNYLDGRIYTGQIIYQQDVIDSINSVVRRTVDLIEGRISNRTINAYYCHASCHTSCHSSRGRR
Ga0222717_100014115	F094928	GAGG	MTMDRGDVNSWVQTYGGSQLRTFDKSAGIYVNAYVNAGGGNNSYTRGQWYYHRFEYVNASNGVYNNYVDGGINSGNIIYPQDIVDTLEDLVRRTVDLIEGRMSNRTINAYYCHSSCHSSCHSSRGRR
Ga0222717_100014116	F040106	N/A	MRYSGPESLTPSSAEKFDVLIQMEVLSGCQQACLGCFVDKNIDPAMNQMIIDRAKELTDGVKRTGLNLREFVIGPTDFFTASNTESVLNNSVVQEIMREHTGARIAAPAKFDVASMDRLKEIFAILDDENKFRRDMIIEFIMPISKVDQMLNDEEYFDNVMEKVDFFKNNTPKQMDWSWTLQASNVVGKKIDKETYNKIIQKSVNEYETIVEMNPAFSRARSQLVQRRNLFGWNDFLGKVIDKDNAQETVMSMANLYCNSINFVGLTIVPGENGPTTHLNVMLHEQAFFLNNKNLDVTGLTFEEILDRKNELVTKGINRSSKVSDCSDCQFAVACASRLIFEAQETLNVDGCVLNKDVLENYNPFDFTWNDDAMKKLGDVS
Ga0222717_100014119	F042905	N/A	MIVHLNGTYAGYYSYDEDKSPINTDFLRTEINLDILHGCSQMCPGCFIPRKNLTKADNLETLYNLLIEGAYHPDEITVGPTDIFDAENFREIMLHPYMKKLYGISAIGFTSTLLQSYQEIRYKLDMIWGLYKDIHRIPDIDFKIVLDIDKYLDGELDDWYKKLEMFKLGSVQFRVNYHKDVFKRIGYNQLCQRVFDDFNAPVVITPSFLTDRNVRGKVSQHLENFKRDMLEQKIDDKWLNLYTFFDAKFNGYGCQNYSFYNNKLYLNPFLYDVIIQRTPQFETTMDANTLYDNIEYAQQVDDCNGCEYMMSCAERNIHLYMESRGLDSCVALKEYMYASD