NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222717_10000093

Scaffold Ga0222717_10000093


Overview

Basic Information
Taxon OID3300021957 Open in IMG/M
Scaffold IDGa0222717_10000093 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)70328
Total Scaffold Genes77 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)51 (66.23%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.0966Long. (o)-122.4216Alt. (m)Depth (m)38
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026009Metagenome / Metatranscriptome199Y
F049214Metagenome / Metatranscriptome147N

Sequences

Protein IDFamilyRBSSequence
Ga0222717_1000009349F049214AGGMTNLNQGYRSGNAFGRVANVDLSTMGTDESLKPGYLLRIRDTYALVTGVEAMAIDLFFTDTLNVGNASASALNGTHATALTQYGVNSVQAYFDLGTGAVAAADKTGNILAPNYDSGYLTFSKLEPYAGNIYHLAPGLPLQPKFMDAASGNWHSTNGTTSYDAAGAPVGFIGDGSSQDMKQVGTISAKLYLKQPVGSNKHTLDEAADGESPRGTASETTLEGLSGFLDGSMSPADNPNWNYGMILEHGEASQPAFRLVNDSDEYILDGRIRLSGWKYKILELSQDQLATLKARAGGRLRFMYYNPVTYQSSGFLSDYLSM
Ga0222717_1000009350F026009GGAGGMGSLGGLDVAYGSQMQLVRTNVLVVETDGTTTKAMAEMVHSIASQKYPAALRPDFTAFVTSGALTEGYGTELTDQVEGNVLKDITKVPMAGSHYASSTDDSRGMSWEAILNVGMAQIGADDTMTADDLFTDGGDTNDTGEMFYASDLQAQLMAAQFASDQTGLAGNHGVSTLNLTALLTDSVLLGGTAVTTAMDSLTETTTAAELNDAIASAGAIVSILAIGKTF
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