Scaffold Ga0213922_1035448

Overview

Basic Information

• Taxon OID: 3300021956
• Scaffold ID: Ga0213922_1035448
• Source Dataset Name: Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 29-17 MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1171
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 33.9263
  • Long. (^o): -83.4268
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000652	Metagenome / Metatranscriptome	959	Y
F005705	Metagenome / Metatranscriptome	392	Y
F033402	Metagenome / Metatranscriptome	177	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213922_10354482	F033402	AGGA	MNDFEIKLTGLNKRQRVLADIMWSIEEWDDVVKFIATLPKRERAECEGIVEMMRMELVEGYRKGMGITNTPEADQVIQQFRLTK
Ga0213922_10354483	F005705	AGGAG	MKIVVKVPQKTRAHLVLFCKDTPFKQKRVESKIKYKRQPKHKGRDE
Ga0213922_10354485	F000652	AGGA	MTGFNSKRASARDKLQEQGMKKVIVRTLLTQELEVPEDWDRLDVFDFLGEYQSFRTAFQGVSNEDQTARIIDLGVVEEVVEQMGEEAYDE