Scaffold Ga0213922_1014856

Overview

Basic Information

• Taxon OID: 3300021956
• Scaffold ID: Ga0213922_1014856
• Source Dataset Name: Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 29-17 MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2072
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Lactobacillaceae → Loigolactobacillus → Loigolactobacillus coryniformis (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 33.9263
  • Long. (^o): -83.4268
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F087202	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213922_10148562	F087202	GGA	MNYIDLLKLAGIFDKQQNFRLSDRIFKIVKAQADDFNLDEDPLGISDIKPSGGMKDDPYVKMLRDLVMSGRITEEQFWVALEKHKPGTFENMLENVGRASDYDIDKIQGNVSAQGVKVDPKERDILSKFYELSNDVFVDFIDSLQSNFASSLRTLARQNQLPEMFNEINDHRAGNLLMELHEPSTKEEFLTREYLELRAHGISLDDAVVMGSAGDYENINEVLNAFVEKMIPSITSQASRITGLRYQEDDVARKLSGVTMNDVNARIENALAELYYIYKG