Scaffold Ga0213880_10000003

Overview

Basic Information

• Taxon OID: 3300021953
• Scaffold ID: Ga0213880_10000003
• Source Dataset Name: Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R07
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 302334
• Total Scaffold Genes: 287
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 219 (76.31%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock → Plant-Associated Microbial Communities From Velloziaceae Species In Rupestrian Grasslands, The National Park Of Serra Do Cipo, Brazil

Source Dataset Sampling Location

• Location Name: Brazil: Minas Gerais
• Coordinates
  • Lat. (^o): -19.28
  • Long. (^o): -43.5919

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027219	Metagenome / Metatranscriptome	195	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213880_10000003215	F027219	GGAG	MSKTKLLLSTAVGLAFVVAGPSAMAVGKKHAPVKGAKSAVGVNFAKAPFKQAKNQPHMLKGGIKEKFLVETWGTTTTALFGGFAVEDAANSINCKKACTVVTNNTAELLSYYSYNQVGVCPLVDGYFTNGSCYFSGALSFPELYSNRTNQTNLAVGSGTHTVQTYLYTFAPAYLGHYQNDYHVYQ