Scaffold Ga0213921_1011702

Overview

Basic Information

• Taxon OID: 3300021952
• Scaffold ID: Ga0213921_1011702
• Source Dataset Name: Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17 MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1605
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 33.9266
  • Long. (^o): -83.4611
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002398	Metagenome / Metatranscriptome	563	Y
F043935	Metagenome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213921_10117021	F002398	N/A	LILFTLINLDPIKNFVSLKTYISENAKVHCYVYFINEDIPDFPRVNLIEKSRVDFFNYLDTIGIEHTQVGSYYFFRKKSL
Ga0213921_10117022	F043935	N/A	MTNKELKILDDQIQYLCNHYQDRIKEIRQVTGINPGYTFMKEAETIEYLYKCVLENRKHEKSNYFSVGTSGWHLVYLRTKKTYKKGEKFVIKIYFSFVETDTYE