Scaffold Ga0213921_1004444

Overview

Basic Information

• Taxon OID: 3300021952
• Scaffold ID: Ga0213921_1004444
• Source Dataset Name: Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17 MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2938
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (40.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 33.9266
  • Long. (^o): -83.4611
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004669	Metagenome	428	N
F015209	Metagenome	256	N
F056602	Metagenome	137	N
F057375	Metagenome	136	N
F065778	Metagenome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213921_10044441	F004669	N/A	VKSLFVGRTANGQDCIACAWNSSELYVFAYEGIVDTFLWALEFFQSVGKAMAYAKLGNGKEDRSYSLPYHVTMEQRTHNQLYRFQLQYLHIFEGTLEIHSNLCDDTPENAIKNLISRGDIEAENSRLIDIFRKREVCA
Ga0213921_100444410	F057375	GAGG	MAETVYFVNASDVFDAIELGDCEQTEFLDQFTYGDNLTDLTLVKKQTFVNRLVEFIRDCEDIYEKDVVMQNLKEYNFGLLD
Ga0213921_10044443	F065778	N/A	MNENTTVIVDHGCALFGTYQASFFCKGEITVENIVAEISKRLGVECTTTGYNEEFHSITVIVPRD
Ga0213921_10044446	F056602	GGTGG	MSNWTKGFIGVAIASQVILFVILFGCKAGDAFYITGVDMFGIVLSSICTLVYIPAILVSHDSDKIRKKLNEQLQA
Ga0213921_10044447	F015209	N/A	MNNYRHKALSLWSALLAEERWHKFESTNCKPSCKGWNGWAPYCECFENHCTFVPKGDIDNMELVIIAKPIDEVLRNIQVIP