Scaffold Ga0213921

Basic Information
Taxon OID	3300021952 Open in IMG/M
Scaffold ID	Ga0213921_1000951 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17 MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021952 Open in IMG/M

Scaffold ID

Ga0213921_1000951 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17 MG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8358
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

8358

Total Scaffold Genes

7 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (33.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetes bacterium TMED75	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetes bacterium TMED75

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	33.9266	Long. (^o)	-83.4611	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

33.9266

Long. (^o)

-83.4611

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F004664	Metagenome / Metatranscriptome	428	N
F005740	Metagenome / Metatranscriptome	391	N
F012111	Metagenome	283	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0213921_10009512	F004664	N/A	MSANTGYKVLNEHMVIPGGWHYRVPETGIEIMGGSWPQLHEFVRNHYTANAIPIPSNLDTLITEYACRNGADCAFNEVEIPKPEGRKSLQIGDVIRFSMSLLHGLTVGGGKVDQAEATRRASICSTCMYNRKPLGCTGCNARVLKEAVKTFSQHGSTPLDESLQSCEFCGCFIRSMVWFPIETLHKFTDATENKNLPAHCWKKRPCTDQ
Ga0213921_10009515	F012111	N/A	MSERAPRRYTDGSVTFEGGIDSGVMPSEVDKNQVAFAVNASFRQSYVSPRPGFVQKDYDLCVTITADNDQITADQTNVTADGWSEECYGPQSLTGTFQCALPYIADDGRTFILMLISGNVWLYDTEQNKAQNLTVSPDLENPSNLLDGWMVQAENFVVIQDGFSKPLIFNGTNLRRAADDEIKCGRMMAYVNGRIWYALPNGFSFRATDIVYGDGTRASVLKETENTFLNEGGDFAVPSDSGGITAMAVPGNPDTSLGQGPLLVFTPRYVFSVQAPVDRDVWKNLNYPIQAISLLTSGALGSRSAITVNGDVFYRAVDGVRSFIIARRSFNDWGNTPISNEILNIAENDQTNLLWASSAVVFDNRLLMTGQPRYNSEGVIHKALMVLDFDLITSLRKKFPPAWAGIWTGLNVLQLVKTENAYGDRCFSIARGSDDTIQIWEITKGDKFDNNITDGKKEIEWMVQTRAYNFEVPFGLKRLDSGDLFIDSLEGDVSFNVTYRPDQYPGWIEWIDFSECATTTQCLDLCPLTNFKPQYRPKMRFPTPSDAPCNETISTPARNLYEVQVMLNIIGYCRIKSIRVHAYDVQEPSVGECRTVYPACTPLDVCDINPLTYTSEAVNPLA
Ga0213921_10009517	F005740	GAG	MKLIVQDIRSTIARAIGVCVDDARVYDYINQACRRLLHKGLWAGAYGRFTIHTVGGCITWPRQIETIEAIADCCGVGTVRNQWFEFQETGYGLLNGNQVCVGKQLIDRGTVVSYRDMSGGTNSYLRVYPGDASDVGKTITLQGVDQNGQWIRTQSNGVWIDGEKLTLALPYVQSTKKFTELTGVIREATNTVSRLYEYDATTTLETDLAVYDPDETLPQYRRSYLADRCNNEEDKPVTVMAKMRHINATSVNDYLIPPCPDAIKLMVMAIR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0213921_1000951

Overview

Ecosystem & Geography

Associated Families

Sequences