Scaffold Ga0213921_1000932

Overview

Basic Information

• Taxon OID: 3300021952
• Scaffold ID: Ga0213921_1000932
• Source Dataset Name: Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17 MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8466
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (15.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 33.9266
  • Long. (^o): -83.4611
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012014	Metagenome / Metatranscriptome	284	Y
F014839	Metagenome	259	Y
F021096	Metagenome / Metatranscriptome	220	N
F040589	Metagenome / Metatranscriptome	161	Y
F060705	Metagenome / Metatranscriptome	132	N
F082389	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213921_10009321	F040589	N/A	MSLAQTAILASALKGGKSSSPASKPSTFSESVAQRPIQWLIVAGAVIYFGGKFIKNVVPTGENLRKGEAETTTSAENPWSANAFLAQKIPAGTNLLTAAGAYKEAKKIYDALNTYFTDDADIVVGVFAALPSKVQVAQVVKSFEAYYKRNILEYLQSGKKTFDFGTGGLSDALYNRIIENVKRK
Ga0213921_100093211	F014839	N/A	MMANENIIISDKLMKLEVENKEMFSRYHKLRRAFNELLELHEELRERAGLLPSRYDWVEAAGLLDDVE
Ga0213921_100093212	F082389	N/A	MSIVKRKNVSGGTYYFNTTTKKFASEAAYKKSKSSPIAKFKARKGKPSEGTCSVYGRELKVKHTSSAGRGLRKCR
Ga0213921_10009322	F060705	N/A	MAISSLNFIISQFETEKYRYFAIYDEDGDRVYFQNDLIDVETAINKLRNFFKDNQGYYTIRVFSKKLSDKNNLIARDNSTIAKYNVEVSIPVLPQGVNGLTGMGGNSLLPPDDPRSNAPNMFQLLGQMSQVEQQMKLMEKDHQHYREVKELQDRIAKMEEEGNKSKGMGAIVDRFAEQLSDPNVIMGLISGVSQLFKKDVVAPMHGVSSEDIMPMNGVDEQVINNISTRREKMVGAVNFLMQHDANFPENISKLAELAKNKPAIYSMAVSYLNNL
Ga0213921_10009323	F021096	GGAGG	VAAVVSPIINYFLTHNLCKDYTAIEGEMSTLVTLNFPNTGNYQNSYYFASQTMLDGQNATITAIEIVPSTELTYLPNGQANVDASILPNGVLYVSNLKRQVIAQLPLYGLQRSANNGKPTFTYFNDQVWQNCYVEFTSSGFTTPITPLTFRVYYVPKIKN
Ga0213921_10009326	F012014	N/A	MNLLSKEVLIGAASLGAGAVAAKVVQKKVLPMIKADISPVVGNLTTLVVGILTPTIVKGSVGTGLGAGMIAVSVAGLVDPYLAKAGITGYDDTYMGDVLMGEVAGGDVLMGATDFSAPSNDFTGAGAGEMDY