NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213921_1000517

Scaffold Ga0213921_1000517


Overview

Basic Information
Taxon OID3300021952 Open in IMG/M
Scaffold IDGa0213921_1000517 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17 MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12461
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (60.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9266Long. (o)-83.4611Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000922Metagenome833Y
F001964Metagenome610Y
F002227Metagenome580Y
F030733Metagenome / Metatranscriptome184N

Sequences

Protein IDFamilyRBSSequence
Ga0213921_100051717F001964AGGMSRNLFAPPRFKVQVSGAIGWSDLKERVVSYRTLEYSTRKEAETVAKELNPGEFTQGRIRVVPVEMPEDYDVYPTPERTKP
Ga0213921_100051720F002227N/AMKLTISSKTNAQTIIDLFNAIITGEVQEHHATPMSIYDEEKHICCIVAANGEQILELIIEREHGDRICPAFEGNPDEEKLP
Ga0213921_100051726F000922AGTAGVRLTPELWEKAKARKLQGETWKAIANDLQLTETSLFQKASKSGFGKLAKEVKEVSLKKKTESLESLSALVRSKLAADAASTLERIEGYSLDGIKDEATRETILGSVAKRSALVFGWSETGEQASVSINLLGSMPDRVAEIQVTGEMETK
Ga0213921_100051728F030733N/AMACPNVFNAFAVATESLAQDVYKRASYRSMWLNLIERGEYPQGTGLTQTSFTTTSIEPTSAETWSAITLAAGNPGDNGGACDVTYNDVPVGYNAVTWSPERFALKGPLLCKDDLTFDHRVEAFLRVYLEKLSIRAQRSWETRYQNIFAKYAIKAIADSSFTQTETIPSGVNEFPWIDGVSTGQALNQSTSELTQEMLDVAAATLIRNGATNPDSSGFISYSSDGPVFPLYIGLEASQRIAQNNPAF

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