Basic Information | |
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Taxon OID | 3300021952 Open in IMG/M |
Scaffold ID | Ga0213921_1000517 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17 MG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 12461 |
Total Scaffold Genes | 28 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 17 (60.71%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 33.9266 | Long. (o) | -83.4611 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F000922 | Metagenome | 833 | Y |
F001964 | Metagenome | 610 | Y |
F002227 | Metagenome | 580 | Y |
F030733 | Metagenome / Metatranscriptome | 184 | N |
Protein ID | Family | RBS | Sequence |
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Ga0213921_100051717 | F001964 | AGG | MSRNLFAPPRFKVQVSGAIGWSDLKERVVSYRTLEYSTRKEAETVAKELNPGEFTQGRIRVVPVEMPEDYDVYPTPERTKP |
Ga0213921_100051720 | F002227 | N/A | MKLTISSKTNAQTIIDLFNAIITGEVQEHHATPMSIYDEEKHICCIVAANGEQILELIIEREHGDRICPAFEGNPDEEKLP |
Ga0213921_100051726 | F000922 | AGTAG | VRLTPELWEKAKARKLQGETWKAIANDLQLTETSLFQKASKSGFGKLAKEVKEVSLKKKTESLESLSALVRSKLAADAASTLERIEGYSLDGIKDEATRETILGSVAKRSALVFGWSETGEQASVSINLLGSMPDRVAEIQVTGEMETK |
Ga0213921_100051728 | F030733 | N/A | MACPNVFNAFAVATESLAQDVYKRASYRSMWLNLIERGEYPQGTGLTQTSFTTTSIEPTSAETWSAITLAAGNPGDNGGACDVTYNDVPVGYNAVTWSPERFALKGPLLCKDDLTFDHRVEAFLRVYLEKLSIRAQRSWETRYQNIFAKYAIKAIADSSFTQTETIPSGVNEFPWIDGVSTGQALNQSTSELTQEMLDVAAATLIRNGATNPDSSGFISYSSDGPVFPLYIGLEASQRIAQNNPAF |
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