Basic Information | |
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Taxon OID | 3300021952 Open in IMG/M |
Scaffold ID | Ga0213921_1000135 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17 MG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 29198 |
Total Scaffold Genes | 48 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 18 (37.50%) |
Novel Protein Genes | 8 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (25.00%) |
Associated Families | 8 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 33.9266 | Long. (o) | -83.4611 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F004049 | Metagenome / Metatranscriptome | 455 | Y |
F005024 | Metagenome / Metatranscriptome | 414 | Y |
F005633 | Metagenome / Metatranscriptome | 394 | Y |
F006107 | Metagenome / Metatranscriptome | 381 | N |
F006262 | Metagenome / Metatranscriptome | 377 | Y |
F009398 | Metagenome / Metatranscriptome | 318 | N |
F010611 | Metagenome / Metatranscriptome | 301 | N |
F032255 | Metagenome / Metatranscriptome | 180 | N |
Protein ID | Family | RBS | Sequence |
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Ga0213921_100013510 | F004049 | N/A | MQASGEGEEDMNVPIGPAAFVFKNKKTGQVIVAPSERWHEYYDKKEDWEHTASINACMAIQYLINVKPKERNRYIRSLTEKV |
Ga0213921_100013529 | F032255 | N/A | MANSQGLAYQFGSPATVTMYSSDNSTAVFSSLASIESYDITHEADTEEVRNSAGEVVGHIGYNERITLNLNLIPSGANAAAALAFCSLGPVNGTVEITGAPNISMMGTANVLNTGRFIYAGGGSVKMTQTGKAMVSITVKKYKNLTTGAAVSLNV |
Ga0213921_100013530 | F006107 | N/A | MNGVALRAEKALVDYLAAGDWSGAGAGTPSFLTSYSRGLYDDPDEQDTMPNFPRVVVSSTSARPIQRTDLTCEVDIEIELQLSADDTDEADVLTTVAALDSLILPLFDDGGASVLNADQDDANGPFTAQFATPSDFGASSISNRSRTFTRSITLFCSATL |
Ga0213921_100013531 | F005024 | GAG | MRPVVNMTVDTSRFDAAVKQYLLSTNRDLHKAINSRFFYLMVRLFVLVPPKSPATERARIADYLSKPLGDINRKSKKTGKRIGKSRLLRRVHLIAQSRERKAGRRGLYGEEMKEAASSLYRKAIGSVGYLRSAVVKSIRIYNRGFAQYNKPKWKPLVKPAGYKPPKKTNSALIALANQYGLPEENVAVHKGTVAHGLQAVPGWNPTAFVSMRTGIADNQYNRVQSIYNPAMQKALDDELAELENHMTEALLANGKVLSDNGIEIR |
Ga0213921_100013532 | F009398 | N/A | MTTIGSSLQQGMAVLQQMLGAPMFIWEGSSIRCIPASINDANVPISGGFQDNVTSRILVMFSDWKTCDSTLVSMDSTLYTLDQGTTFSRLQREDTGFVLQENTDRIALTFCKPRPVVGRTLVYQGRTLRILSCRVDASGAYYSLELGAKSK |
Ga0213921_100013542 | F005633 | AGG | MRIATTISVDKSGKSKIVAGPEVDAAAQREDFNTAKIPEGTKLILWIQGSVAPKVRKG |
Ga0213921_100013545 | F006262 | N/A | VFTFTVAIKRSYLRAVYSALGGSTLLAALSAKSIAASSVIESGQVVRSTSSSDVSVEFAEPGKGGPTPSEMVEMWESLLNDYDLAVYYLGQDGISNPTDAQIYNKLMAVVLIAATSYGGDFSNFRREGTFRTGIT |
Ga0213921_100013547 | F010611 | N/A | MTQKEYRMHSGLTSGYVTQLVARGMPLDSAEAADAWRQKNVRARARNIPPTASEQEDTAIEQEGPYRPEEAAQPVDTATAATDSPQGAYERQKEIERAAYDLAVQALRGRRADAARLVAIHATAAKNLTSSRDEVIAQAEKERRLVSGDWVRKVMQEHDGAVSSLLKAMPKQLSGRIAPHDPEHAERELSRWVQEVALKTLHNTDPWKA |
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