NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213921_1000135

Scaffold Ga0213921_1000135


Overview

Basic Information
Taxon OID3300021952 Open in IMG/M
Scaffold IDGa0213921_1000135 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17 MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29198
Total Scaffold Genes48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (37.50%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Associated Families8

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9266Long. (o)-83.4611Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004049Metagenome / Metatranscriptome455Y
F005024Metagenome / Metatranscriptome414Y
F005633Metagenome / Metatranscriptome394Y
F006107Metagenome / Metatranscriptome381N
F006262Metagenome / Metatranscriptome377Y
F009398Metagenome / Metatranscriptome318N
F010611Metagenome / Metatranscriptome301N
F032255Metagenome / Metatranscriptome180N

Sequences

Protein IDFamilyRBSSequence
Ga0213921_100013510F004049N/AMQASGEGEEDMNVPIGPAAFVFKNKKTGQVIVAPSERWHEYYDKKEDWEHTASINACMAIQYLINVKPKERNRYIRSLTEKV
Ga0213921_100013529F032255N/AMANSQGLAYQFGSPATVTMYSSDNSTAVFSSLASIESYDITHEADTEEVRNSAGEVVGHIGYNERITLNLNLIPSGANAAAALAFCSLGPVNGTVEITGAPNISMMGTANVLNTGRFIYAGGGSVKMTQTGKAMVSITVKKYKNLTTGAAVSLNV
Ga0213921_100013530F006107N/AMNGVALRAEKALVDYLAAGDWSGAGAGTPSFLTSYSRGLYDDPDEQDTMPNFPRVVVSSTSARPIQRTDLTCEVDIEIELQLSADDTDEADVLTTVAALDSLILPLFDDGGASVLNADQDDANGPFTAQFATPSDFGASSISNRSRTFTRSITLFCSATL
Ga0213921_100013531F005024GAGMRPVVNMTVDTSRFDAAVKQYLLSTNRDLHKAINSRFFYLMVRLFVLVPPKSPATERARIADYLSKPLGDINRKSKKTGKRIGKSRLLRRVHLIAQSRERKAGRRGLYGEEMKEAASSLYRKAIGSVGYLRSAVVKSIRIYNRGFAQYNKPKWKPLVKPAGYKPPKKTNSALIALANQYGLPEENVAVHKGTVAHGLQAVPGWNPTAFVSMRTGIADNQYNRVQSIYNPAMQKALDDELAELENHMTEALLANGKVLSDNGIEIR
Ga0213921_100013532F009398N/AMTTIGSSLQQGMAVLQQMLGAPMFIWEGSSIRCIPASINDANVPISGGFQDNVTSRILVMFSDWKTCDSTLVSMDSTLYTLDQGTTFSRLQREDTGFVLQENTDRIALTFCKPRPVVGRTLVYQGRTLRILSCRVDASGAYYSLELGAKSK
Ga0213921_100013542F005633AGGMRIATTISVDKSGKSKIVAGPEVDAAAQREDFNTAKIPEGTKLILWIQGSVAPKVRKG
Ga0213921_100013545F006262N/AVFTFTVAIKRSYLRAVYSALGGSTLLAALSAKSIAASSVIESGQVVRSTSSSDVSVEFAEPGKGGPTPSEMVEMWESLLNDYDLAVYYLGQDGISNPTDAQIYNKLMAVVLIAATSYGGDFSNFRREGTFRTGIT
Ga0213921_100013547F010611N/AMTQKEYRMHSGLTSGYVTQLVARGMPLDSAEAADAWRQKNVRARARNIPPTASEQEDTAIEQEGPYRPEEAAQPVDTATAATDSPQGAYERQKEIERAAYDLAVQALRGRRADAARLVAIHATAAKNLTSSRDEVIAQAEKERRLVSGDWVRKVMQEHDGAVSSLLKAMPKQLSGRIAPHDPEHAERELSRWVQEVALKTLHNTDPWKA

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