Basic Information | |
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Taxon OID | 3300021952 Open in IMG/M |
Scaffold ID | Ga0213921_1000078 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17 MG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 37356 |
Total Scaffold Genes | 58 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 25 (43.10%) |
Novel Protein Genes | 8 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (25.00%) |
Associated Families | 8 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 33.9266 | Long. (o) | -83.4611 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F011666 | Metagenome | 288 | Y |
F031485 | Metagenome / Metatranscriptome | 182 | Y |
F033013 | Metagenome / Metatranscriptome | 178 | Y |
F056612 | Metagenome / Metatranscriptome | 137 | N |
F087198 | Metagenome | 110 | N |
F088884 | Metagenome | 109 | N |
F091645 | Metagenome / Metatranscriptome | 107 | N |
F093341 | Metagenome | 106 | N |
Protein ID | Family | RBS | Sequence |
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Ga0213921_100007811 | F031485 | N/A | MAKIEWEVPNPGVGGSYLFDPKSGKLTLITETAAPTTDGTDSEEVSNRED |
Ga0213921_100007829 | F011666 | N/A | MQWHPIERTQESQFSEVATAKMLEEWLKQGDIKGIYNAALLLNTMLHQQRTITKWLAGEAARNLGRPDLEDDILQKSIIQSQ |
Ga0213921_100007832 | F091645 | N/A | MDFTALFPEHVEPNRGPGISYCVAPNARMFDYELVMPGERSMRGCLRAVNSEDAERILQNRHPSATKICIGQGRQIVPFKAKT |
Ga0213921_100007833 | F056612 | GAG | MSNFESAFDAKFSLFQVKQKKSDKAPDKTGTIELELSEAMKLAEYLTAHPGEEGYGGKTVIKLAISAWDRCSTTGTEYTSGTVWAKKPEPTVNDIPAF |
Ga0213921_100007836 | F033013 | N/A | MAIQLTAKASTLKTVMLQIDPELYIRIKAAAKQHNIPAAVAMRQILEQGIEEVEANA |
Ga0213921_100007838 | F088884 | GAG | MKLFAPEHAGKHVWQVADAKTRSVSYTANNSTSPPPDGVHGHPLGRYDGDGLYWTFIPMAGNEDPNHPLTSRFVKHPLAEQEQRQAIKEKVWGRLDSFGSYKETEF |
Ga0213921_100007844 | F087198 | N/A | MDSYQRNAETLLNELAQLKYEQRAIELRIKDVQAKLTVHVAAGDMEHLAGESENTYKYDNINYVFSAGRVTYDYSNCDDVTAAAENLKELQSTAVALGRAVQKVGTPFWTVRA |
Ga0213921_100007856 | F093341 | N/A | MQTVLLFKATNDRNGNPCRVFAAFDQFGRITGAWDEGYSGHHAVPPELRSIAATCDAIAVSQVTYRSLLRQGQQALRFSPV |
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