NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0213921_1000078

Scaffold Ga0213921_1000078


Overview

Basic Information
Taxon OID3300021952 Open in IMG/M
Scaffold IDGa0213921_1000078 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17 MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)37356
Total Scaffold Genes58 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (43.10%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Associated Families8

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9266Long. (o)-83.4611Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011666Metagenome288Y
F031485Metagenome / Metatranscriptome182Y
F033013Metagenome / Metatranscriptome178Y
F056612Metagenome / Metatranscriptome137N
F087198Metagenome110N
F088884Metagenome109N
F091645Metagenome / Metatranscriptome107N
F093341Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0213921_100007811F031485N/AMAKIEWEVPNPGVGGSYLFDPKSGKLTLITETAAPTTDGTDSEEVSNRED
Ga0213921_100007829F011666N/AMQWHPIERTQESQFSEVATAKMLEEWLKQGDIKGIYNAALLLNTMLHQQRTITKWLAGEAARNLGRPDLEDDILQKSIIQSQ
Ga0213921_100007832F091645N/AMDFTALFPEHVEPNRGPGISYCVAPNARMFDYELVMPGERSMRGCLRAVNSEDAERILQNRHPSATKICIGQGRQIVPFKAKT
Ga0213921_100007833F056612GAGMSNFESAFDAKFSLFQVKQKKSDKAPDKTGTIELELSEAMKLAEYLTAHPGEEGYGGKTVIKLAISAWDRCSTTGTEYTSGTVWAKKPEPTVNDIPAF
Ga0213921_100007836F033013N/AMAIQLTAKASTLKTVMLQIDPELYIRIKAAAKQHNIPAAVAMRQILEQGIEEVEANA
Ga0213921_100007838F088884GAGMKLFAPEHAGKHVWQVADAKTRSVSYTANNSTSPPPDGVHGHPLGRYDGDGLYWTFIPMAGNEDPNHPLTSRFVKHPLAEQEQRQAIKEKVWGRLDSFGSYKETEF
Ga0213921_100007844F087198N/AMDSYQRNAETLLNELAQLKYEQRAIELRIKDVQAKLTVHVAAGDMEHLAGESENTYKYDNINYVFSAGRVTYDYSNCDDVTAAAENLKELQSTAVALGRAVQKVGTPFWTVRA
Ga0213921_100007856F093341N/AMQTVLLFKATNDRNGNPCRVFAAFDQFGRITGAWDEGYSGHHAVPPELRSIAATCDAIAVSQVTYRSLLRQGQQALRFSPV

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.