Scaffold Ga0213921_1000078

Overview

Basic Information

• Taxon OID: 3300021952
• Scaffold ID: Ga0213921_1000078
• Source Dataset Name: Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17 MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37356
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (43.10%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 33.9266
  • Long. (^o): -83.4611
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011666	Metagenome	288	Y
F031485	Metagenome / Metatranscriptome	182	Y
F033013	Metagenome / Metatranscriptome	178	Y
F056612	Metagenome / Metatranscriptome	137	N
F087198	Metagenome	110	N
F088884	Metagenome	109	N
F091645	Metagenome / Metatranscriptome	107	N
F093341	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213921_100007811	F031485	N/A	MAKIEWEVPNPGVGGSYLFDPKSGKLTLITETAAPTTDGTDSEEVSNRED
Ga0213921_100007829	F011666	N/A	MQWHPIERTQESQFSEVATAKMLEEWLKQGDIKGIYNAALLLNTMLHQQRTITKWLAGEAARNLGRPDLEDDILQKSIIQSQ
Ga0213921_100007832	F091645	N/A	MDFTALFPEHVEPNRGPGISYCVAPNARMFDYELVMPGERSMRGCLRAVNSEDAERILQNRHPSATKICIGQGRQIVPFKAKT
Ga0213921_100007833	F056612	GAG	MSNFESAFDAKFSLFQVKQKKSDKAPDKTGTIELELSEAMKLAEYLTAHPGEEGYGGKTVIKLAISAWDRCSTTGTEYTSGTVWAKKPEPTVNDIPAF
Ga0213921_100007836	F033013	N/A	MAIQLTAKASTLKTVMLQIDPELYIRIKAAAKQHNIPAAVAMRQILEQGIEEVEANA
Ga0213921_100007838	F088884	GAG	MKLFAPEHAGKHVWQVADAKTRSVSYTANNSTSPPPDGVHGHPLGRYDGDGLYWTFIPMAGNEDPNHPLTSRFVKHPLAEQEQRQAIKEKVWGRLDSFGSYKETEF
Ga0213921_100007844	F087198	N/A	MDSYQRNAETLLNELAQLKYEQRAIELRIKDVQAKLTVHVAAGDMEHLAGESENTYKYDNINYVFSAGRVTYDYSNCDDVTAAAENLKELQSTAVALGRAVQKVGTPFWTVRA
Ga0213921_100007856	F093341	N/A	MQTVLLFKATNDRNGNPCRVFAAFDQFGRITGAWDEGYSGHHAVPPELRSIAATCDAIAVSQVTYRSLLRQGQQALRFSPV