Basic Information | |
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Taxon OID | 3300021951 Open in IMG/M |
Scaffold ID | Ga0222624_1242174 Open in IMG/M |
Source Dataset Name | Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30 (Metagenome Metatranscriptome) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1643 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Candidatus Nitrosocosmicus | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: East River, Colorado | |||||||
Coordinates | Lat. (o) | 38.9201 | Long. (o) | -106.9487 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F007651 | Metagenome / Metatranscriptome | 347 | N |
Protein ID | Family | RBS | Sequence |
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Ga0222624_12421743 | F007651 | N/A | LNELIARKDKLEGELHHELSADYNELMKKVSESFRDMHENSVQYYKQKANEELDKMEKNIQSGNKLSAINEKLLADTYLSFTTTI |
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