Scaffold Ga0222624_1131879

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0222624_1131879

Scaffold Ga0222624_1131879

Overview

Basic Information
Taxon OID	3300021951 Open in IMG/M
Scaffold ID	Ga0222624_1131879 Open in IMG/M
Source Dataset Name	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30 (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	668
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.9201	Long. (^o)	-106.9487	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001339	Metagenome / Metatranscriptome	719	Y
F006612	Metagenome / Metatranscriptome	369	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222624_11318791	F001339	AGGAG	VGTKTITMYVSDLDQSEIPAGQAYQLSIRHPDGSIQQLDISEQNYRDLKLAGVGKTLKKRGRKPGSTTTADSTPRKRRPRQNRKPAVTA
Ga0222624_11318792	F006612	AGGAG	VGTKTITMYVSDIDQSEIPAGQAYQLSIRHPDGSTQQLDISEQNYR

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