NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0063871_1121936

Scaffold Ga0063871_1121936


Overview

Basic Information
Taxon OID3300021926 Open in IMG/M
Scaffold IDGa0063871_1121936 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic phytoplankton communities from South Atlantic Ocean - 30m ANT-15 ARK-20-3 (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)878
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameSouth Atlantic Ocean
CoordinatesLat. (o)-17.283Long. (o)2.9768Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F098578Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0063871_11219361F098578N/AMGLFDLQSLEWTPAACFLTVQAGLTVMTAMSFLLGQTDGIYKFEPHTKEISSRAYELIIGGSLLGWGLSMVGALIAGGAQVMCILQLIPMLAATYYHHVCGGKTNVVVNTVLMTAGAYFGFVPLPEVKSVEWTSAAILMAVYTALIAFSGVLFLLGKPDTIYENEPHTKAVMSRRGELQAGACLLGWGVGIGAATIAGGAQDMCILYLPGLLACTVHHHLGGGTKNVILNLVFAMPAAYFGLVR
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