Scaffold Ga0214479_104446

Overview

Basic Information

• Taxon OID: 3300021914
• Scaffold ID: Ga0214479_104446
• Source Dataset Name: Marine eukaryotic communities from Monterey Bay, California, United States - M1_20Mar14CPVII9sort6BwellE14
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1807
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED88 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Seawater → Marine Eukaryotic Communities From Various Locations To Study Complex Ecological Interactions

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.746
  • Long. (^o): -122.0257
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F057890	Metagenome / Metatranscriptome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214479_1044462	F057890	N/A	NPKLMVLSSEGLHLLSNVAVWRHDFETINDKNVALWHRYYTDVINYYIMKETHREWIDNKNKEKKMKKEYSTSDGWEVFRFQISEEHRINRTFNTLNDFLDYWFHEYNNRQESSNRIEPCYMKKQTKKQSGECPTGVQQEALERYQTLSYTDKAIYRAIGKEYFRKKVVYVNN