Scaffold Ga0063086_1002746

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0063086_1002746

Scaffold Ga0063086_1002746

Overview

Basic Information
Taxon OID	3300021902 Open in IMG/M
Scaffold ID	Ga0063086_1002746 Open in IMG/M
Source Dataset Name	Metatranscriptome of marine eukaryotic phytoplankton communities from the Arctic Ocean - ARK-1S (Eukaryote Community Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1166
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location Name	Arctic Ocean
Coordinates	Lat. (^o)	73.0188	Long. (^o)	9.8566	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028074	Metagenome / Metatranscriptome	192	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0063086_10027461	F028074	N/A	RRMGDLVESGQGYVTDARLSNLYGMLSTDPEDDLSLEAKGRSDELGSRLQSLDARFTKQQASEAEKFKVLRMVLDKIEDDTSVEKISLDTLRDRYDQEIKSLESNSLLDLNIHRASRRDLDTALSKKIDEKFGVFRAELMEEKQRRMDAARRSNLDPVVVPNLAGKIEQEGGLRRDRGEQLLDKIRGRTLNLHNMLSVEDAAHATVEDFTQNIVGKAKSLRADIAREKDARVVTEGRHAQRVETLRELAADVADDRTKRARKREQMFVKVKEETCDMNKYVSAETQARLDSEEYYARMCDEAVVKMQGEVEKECNERELSEQHFFGLLEETTARVRAKM

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.