Scaffold Ga0063873_1018352

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0063873_1018352

Scaffold Ga0063873_1018352

Overview

Basic Information
Taxon OID	3300021897 Open in IMG/M
Scaffold ID	Ga0063873_1018352 Open in IMG/M
Source Dataset Name	Metatranscriptome of marine eukaryotic phytoplankton communities from Norwegian Sea - 20m ARK-7M ARK-7-2 (Eukaryote Community Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1123
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location Name	Arctic Ocean: Norwegian Sea
Coordinates	Lat. (^o)	73.0188	Long. (^o)	9.8566	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F100229	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0063873_10183521	F100229	N/A	KKMLSFVTLSQGAPSIPHEGTGQHAHPTVLAASDEFNSINSVQFNNNHQKSHDCVKKWMTPGHAQFVDHNPHVQSPEIVDKTAHSFWIKPEADHCNQPAGRELQYIYDSRPGGGGAAWVNCTMQPSPDRMQYSAEIKKFTYYTFTEGTCASLGDKSPGCTHGTATKVKDCTRKPDEPNKGTFQCDQNVQNNWEYFPQTDKWYFAYFEEYKKTIGRVTLLGKDCDCGIHKGRASLGAKLASWMIWTQALAGDAVNGLANGHLPAAHPVVAYIGDFAHDQNYNGGAGGSRWPRAPELGAEAIIEEAPPAESFGKGALHYELGLPPCIHYYTDYGADKLKKLDTKEPEVDGGGAAAEADAAAPQR

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