Scaffold Ga0063137_1018560

Overview

Basic Information

• Taxon OID: 3300021892
• Scaffold ID: Ga0063137_1018560
• Source Dataset Name: Metatranscriptome of Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Stratiphyt 2011 S15 C1 B20 (Eukaryote Community Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 916
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Atlantic Ocean
• Coordinates
  • Lat. (^o): 44.279789
  • Long. (^o): -12.60983

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022350	Metatranscriptome	214	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0063137_10185602	F022350	AGGA	MDQQSGTNAPTAPHQVIYIIQAPKEKVNIKDAYNIKAATALGIIHIISGFIALGSDIAGMVDGHNAFATGIWTSVFFFISGGLAIGGARSGNKCLVVATMVMAIISAVSAGILLIMSSISLSVFSYGYQYQYRYGSPVTYGLLIAMGATMLIVAIASASLTCYPLCCRSTKQGAVHYQPNQVPASVLVNADQIATLNLPAVQDLQAPPPTSAKLISESAEPPAYQDVAGVGSKYQKF