Scaffold Ga0063122_1024084

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0063122_1024084

Scaffold Ga0063122_1024084

Overview

Basic Information
Taxon OID	3300021888 Open in IMG/M
Scaffold ID	Ga0063122_1024084 Open in IMG/M
Source Dataset Name	Metatranscriptome of Marine eukaryotic phytoplankton communities from the Antarctic Ocean - ANT-16 (Eukaryote Community Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1079
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location Name	Southern Ocean
Coordinates	Lat. (^o)	-18.2496	Long. (^o)	3.7992	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008671	Metatranscriptome	329	Y
F083565	Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0063122_10240841	F083565	N/A	FTLVHFLALLVCWFWSVYVDNWGGGCVITAVFLMSPAVCPDVQVFLNVLNAVIVAVVAGTLVFQWTCGSGFGDQILPFAALVLWAVGLYGVFAKSVFLLPCLVFVALTPFRWVTSCPTGEIAAGARALWAGMVANVIAIVLVCSFQFFLAVDRPSNLAVNSLDDAFGGLRKAFDAFWKQ
Ga0063122_10240842	F008671	GAG	MYRCPWKAGLYLDIVSHVQSIRLDILMLWFAMAGSDGKPDAIFAKFGDSGHFKSVKEDLNSTLEDAHGLAIAMISHEGGKFSGLSNLKHTTGIDDLGALPGLITELNGKMKIPATAPDSMEDDEVCQVSTVCMLLDITIKHIADTMKVTIR

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