Scaffold Ga0063143_1011180

Overview

Basic Information

• Taxon OID: 3300021884
• Scaffold ID: Ga0063143_1011180
• Source Dataset Name: Metatranscriptome of Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Stratiphyt 2011 S25 C1 B22 (Eukaryote Community Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 735
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Atlantic Ocean
• Coordinates
  • Lat. (^o): 58.000163
  • Long. (^o): -16.520083

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045520	Metagenome / Metatranscriptome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0063143_10111801	F045520	AGTAGG	MALNRLYKHIEDLIQNEEDVSDLIPCKTDILSVRECRNGGKACDDLGLDLLKCMAQYKVDTTERIRASIGVAKYNEYVKEIEGKHGKEKASEIINEPSEQLKDIKAYQLLHRIANNTHPKGPPKTKDDLMKWTYADQVRLEMGEGEWWDAVKIIGYEFGLSKTDALFGLERENDLIDSAQSRLIPGFADRKENALSAAKKIEDYVKEAVPGRKTGADFAA