Scaffold Ga0063141_102319

Overview

Basic Information

• Taxon OID: 3300021864
• Scaffold ID: Ga0063141_102319
• Source Dataset Name: Metatranscriptome of Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Stratiphyt 2011 S21 C1 B12 (Eukaryote Community Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1047
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Atlantic Ocean
• Coordinates
  • Lat. (^o): 52.621788
  • Long. (^o): -16.497225

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014356	Metatranscriptome	263	N
F035620	Metatranscriptome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0063141_1023191	F035620	GAGG	MSYGGVIGRPGWSVVGSCLVVDKRRLSVCNMLVVDCSYRSCMVDLLVVVVGSDRGRDDGSLVASVAMADTGERASHSMGCVEEALRADQGGQTGADKQDRLMTEHGCPSSN
Ga0063141_1023192	F014356	GAGG	VPTLETKCDQEDGGHILELRTEEKCQDVARTVCVERHNVVDNEVCAFSYTLHPVPTEAKLVEALWTEVCHQETICLNPHHAQPSYGAPPAYCHEEIHETCALEPVLEPVLRPVTVSLPQPVEVCINKQIVLPYLECEKVKDRHCMVVPRAGKGYKYQIDKCTVELGEPACQETLLQLPQQACLQKIERVNTVYTTPEKVSYSG