Scaffold Ga0063141_100961

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0063141_100961

Scaffold Ga0063141_100961

Overview

Basic Information
Taxon OID	3300021864 Open in IMG/M
Scaffold ID	Ga0063141_100961 Open in IMG/M
Source Dataset Name	Metatranscriptome of Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Stratiphyt 2011 S21 C1 B12 (Eukaryote Community Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	525
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location Name	Atlantic Ocean
Coordinates	Lat. (^o)	52.621788	Long. (^o)	-16.497225	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F039443	Metatranscriptome	163	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0063141_1009611	F039443	N/A	LILSLAVAAQAAPQLLYGGVGIHAIPTVVKQEVKYKTAAFEPVEADTPADATLIELKETEHKFDTLVPGPVQYAHTGFPLGYGYGYGLPLAAAPVKVEVPEVKTIELPATPYLGYPYGLGLGYPYGLPVVAAAPAAEEPAAE

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