Scaffold Ga0213851_1166368

Overview

Basic Information

• Taxon OID: 3300021860
• Scaffold ID: Ga0213851_1166368
• Source Dataset Name: Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2014 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 854
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania
• Coordinates
  • Lat. (^o): 41.1752
  • Long. (^o): -78.4168

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001528	Metagenome / Metatranscriptome	677	Y
F008431	Metagenome / Metatranscriptome	333	Y
F037974	Metagenome / Metatranscriptome	167	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213851_11663681	F037974	AGGAG	MPNTNHTTDILRVKQIVIDEEGNVAKRFPRIDAEGQLKNTLLFAIHPEICVLSMQV
Ga0213851_11663682	F001528	AGGAG	MSEKNQIVVVLIVALFLGAFVDRITALKIVAGVVLLWTLQNQPAVFECIRKLFSFVQKRPSVREYRGGVTTFRAS
Ga0213851_11663683	F008431	N/A	CVTEAEAIIEAFREKVNLYKVTEFQTRADIGRSGEPILRKETLKKNNPAS