Scaffold Ga0226832_10283700

Overview

Basic Information

• Taxon OID: 3300021791
• Scaffold ID: Ga0226832_10283700
• Source Dataset Name: Hydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Daikoku_FS921 150_kmer
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Marine Biological Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 671
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium TMED10 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Hydrothermal Vent Fluids → Characterization Of Microbial Community From Mariana Back Arc

Source Dataset Sampling Location

• Location Name: Daikoku vent field, Mariana back arc basin
• Coordinates
  • Lat. (^o): 21.3250983
  • Long. (^o): 144.19162955
  • Depth (m): 409.13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011853	Metagenome	286	Y
F021104	Metagenome	220	N
F046984	Metagenome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0226832_102837001	F021104	N/A	DDKIRHGLKNTTAELFLHKSAKPLRDINFLEPKKQASLFGETFDEEFSDECEGLCGV
Ga0226832_102837002	F011853	AGGAGG	MKPEDIKKKKEMLIKQHNTLKDKMDEGKNAIATMQAQLNGLVGAIQLCDDFLNNPEEPKKDK
Ga0226832_102837003	F046984	N/A	MDVWDPGEETTVFRQIKKLISRSYRALKGWVVRLDPGNLVFLVKDRFNAMCEHYGGSISCWGWHK