Basic Information | |
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Taxon OID | 3300021791 Open in IMG/M |
Scaffold ID | Ga0226832_10016341 Open in IMG/M |
Source Dataset Name | Hydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Daikoku_FS921 150_kmer |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Marine Biological Laboratory |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2405 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (62.50%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Hydrothermal Vent Fluids → Characterization Of Microbial Community From Mariana Back Arc |
Source Dataset Sampling Location | ||||||||
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Location Name | Daikoku vent field, Mariana back arc basin | |||||||
Coordinates | Lat. (o) | 21.3250983 | Long. (o) | 144.19162955 | Alt. (m) | Depth (m) | 409.13 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000615 | Metagenome / Metatranscriptome | 984 | Y |
F001048 | Metagenome / Metatranscriptome | 793 | Y |
F007052 | Metagenome / Metatranscriptome | 359 | Y |
F030785 | Metagenome / Metatranscriptome | 184 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0226832_100163412 | F030785 | AGGA | MKTATVEILEEGETIFGSRTRGEYMVRRYEDGIEMGGEFHYTLTEAGAAVRKWENQKEK |
Ga0226832_100163413 | F001048 | GAG | MKIVSTKQFWWRFNHLKRNGAEITVTDRTRPFDLKEWNRIESLVNKRVRWELGSEGYATWSECGYKDIPTLAKAYRIS |
Ga0226832_100163414 | F007052 | GAG | MKNKNETYFVARLINKGKFLSSEIFESLEEARLWAMKEAKLLISDLEMLRSTNVGDICVEIDKHFFAYELDSEELLKNSTRVL |
Ga0226832_100163415 | F000615 | N/A | VSGLERPENIMCRIRCFYECSDGTMGFAEMVLPYEEDIAGFVKHWKTGGRMVITEHIDLV |
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