Scaffold Ga0226832_10005489

Overview

Basic Information

• Taxon OID: 3300021791
• Scaffold ID: Ga0226832_10005489
• Source Dataset Name: Hydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Daikoku_FS921 150_kmer
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Marine Biological Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3983
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (9.09%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Hydrothermal Vent Fluids → Characterization Of Microbial Community From Mariana Back Arc

Source Dataset Sampling Location

• Location Name: Daikoku vent field, Mariana back arc basin
• Coordinates
  • Lat. (^o): 21.3250983
  • Long. (^o): 144.19162955
  • Depth (m): 409.13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015789	Metagenome	252	Y
F021787	Metagenome	217	N
F024125	Metagenome / Metatranscriptome	207	N
F054936	Metagenome	139	N
F096037	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0226832_100054892	F015789	N/A	MRDKSMKEKTVKVKGPWVNGVQTVKEISQEEWTSYTPLNTRVKGQWFRVVKW
Ga0226832_100054894	F024125	N/A	MKEKIYEKTLNLFTGKVLTCDQCGAEDSKENEVREWGNPYDHGFICEECDCHET
Ga0226832_100054895	F054936	N/A	MGKKYYKTPLNPRPNGQDGSLGKVADNWDDCDAMSHYTYDKGWWAETKRLVDESYAKLQAKGFFDSTSDYWAKRRKTDPRCQGQK
Ga0226832_100054897	F021787	N/A	MTDMISCEEVFEMDADARAEFDVVCDEWLNEAILAQDAEEDLVECEGCGEQWYAHQAGANGRIEWCRKCYKNDPYYV
Ga0226832_100054899	F096037	N/A	MKTTVYAWGAEKNNVLHIYAGMTTQKDLGIRLNGVKDIMVGAADSWFGGPEDSSLGAYNLDLIYADSTQNYSRHKEQKAINAVWAVEQKYRNASLPVRSLNSNRAVGLGSVQKYLDRTNSVYGHVLLHDTELDSNFNNGVFQAIESWIKEKVQDSTTLKRKFETALIAKQQKQALIANITKVLGLEPVLA