NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0226659_10019797

Scaffold Ga0226659_10019797


Overview

Basic Information
Taxon OID3300021603 Open in IMG/M
Scaffold IDGa0226659_10019797 Open in IMG/M
Source Dataset NameGranular sludge microbial community from anaerobic digester, University of Toronto, Ontario, Canada - UASBVu03_granules spades
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Toronto
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5024
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Granular Sludge → Metagenomes From Anaerobic Digester Of Solid Waste

Source Dataset Sampling Location
Location NameUniversity of Toronto, Toronto, Ontario, Canada
CoordinatesLat. (o)43.6629Long. (o)-79.3957Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022683Metagenome / Metatranscriptome213N
F041288Metagenome / Metatranscriptome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0226659_100197971F041288AGGAGGMFKRFSSSLYFLQLSVAITFLILAGIASSATLLKSRLLPTEQTLKSSLGSEKFNTLRFETYGGLPENRMIGYFLYREGISVKGDGPQIESIGKLSLNEVLADHERVARAKFYGRLGHVMIREITREGDVVGYAVNDPKMEITLWDVTKYPSAISLELRYKDLQPKGERYDAGPR
Ga0226659_100197972F022683GGAGGMASEMADQMKPLTDFYAKWSKDSLDMMSKGMAMYNRMSRAWTEVGEGSAAEKPEDMLKKWTEAFSGSYNELFEMYAQPFKMFGMGGQTPGKEAWEEAFAKWQKMFTAMPSGPAPAAGDEFMNFSKNWFEGYSKIWQTWMESMQRMGEACKSAVSEGEKPDAAMGAFTEISDRFMQQWSAFVTEQAQAFFTLWRSRLPSEKKEPAKKAKKE

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