Scaffold Ga0194059

Basic Information
Taxon OID	3300021600 Open in IMG/M
Scaffold ID	Ga0194059_1022330 Open in IMG/M
Source Dataset Name	Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Sep2016-L626-11m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0194059_1022330 Open in IMG/M

Source Dataset Name

Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Sep2016-L626-11m

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2203
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

2203

Total Scaffold Genes

4 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location
Location Name	Canada: Ontario
Coordinates	Lat. (^o)	49.753	Long. (^o)	-93.798	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Canada: Ontario

Coordinates

Lat. (^o)

49.753

Long. (^o)

-93.798

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035307	Metagenome	172	Y
F056615	Metagenome / Metatranscriptome	137	Y
F058150	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194059_10223301	F058150	N/A	VVKLYDITEDPAVSPPINPGTILATLTPIKSEVDAGTYIVYIPVSYTTRQRQFRLNWSYTVGSVSTEKNHKVFVQTPYTDMSQAIDALGLGSDFSDPNSKSYTELCNAERYARKLIESYTQQQFYLYDDVQIAYGSGSDVLPLPYKLAELHELYQNDILLLNTLTNVNNWNYNTIISESGFGIRVNRANMLDNTVYTANGMVPPTINDTWGGSFAVGSTYRIQGRFGWEEVPDEIDLACIELMKDYFSKDKAWRNKYIKAIKTFDWEFEYNSGTYSGTGNLYVDQLLLPYVINKMVVI
Ga0194059_10223302	F056615	N/A	MYDLADSIMPLFADIYKQFDIQDTDTGSIKKQWQFDRTVSCSAKGIITNSASSRSGDKQIISNKYTNYQSLEIRTSEKLTLREKITNIRDAEGTVIWEELNFPTNTPTVYELMGTTPITDPFGGVIAYNSAVKRSENQIIGQ
Ga0194059_10223303	F035307	GGA	LDNSSLLVTAASGLQKTMVGTKGAILKDSTVAQISAAIYYQADVVSKITTNKQFQARFQSVIFKQLQQDFGLYIDAQARVNPQSLHHVYEWNKVGNSGSRLFKLNITERNGLSFKLGSTFLMSKSPVPNSFGKRKYVFKNKASVMEAGMPVIISPRAAKRLVFETSTGTVYMPIGASVTVTRPGGGKATGRFQIAYARFFTGNLVNLSIKRSGFQQIFNSSLTKAMRLPSEVRKVKYSFSANTLNMQAESAIASAFGGI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0194059_1022330

Overview

Ecosystem & Geography

Associated Families

Sequences