Basic Information | |
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Taxon OID | 3300021600 Open in IMG/M |
Scaffold ID | Ga0194059_1022330 Open in IMG/M |
Source Dataset Name | Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Sep2016-L626-11m |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2203 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada |
Source Dataset Sampling Location | ||||||||
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Location Name | Canada: Ontario | |||||||
Coordinates | Lat. (o) | 49.753 | Long. (o) | -93.798 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F035307 | Metagenome | 172 | Y |
F056615 | Metagenome / Metatranscriptome | 137 | Y |
F058150 | Metagenome / Metatranscriptome | 135 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0194059_10223301 | F058150 | N/A | VVKLYDITEDPAVSPPINPGTILATLTPIKSEVDAGTYIVYIPVSYTTRQRQFRLNWSYTVGSVSTEKNHKVFVQTPYTDMSQAIDALGLGSDFSDPNSKSYTELCNAERYARKLIESYTQQQFYLYDDVQIAYGSGSDVLPLPYKLAELHELYQNDILLLNTLTNVNNWNYNTIISESGFGIRVNRANMLDNTVYTANGMVPPTINDTWGGSFAVGSTYRIQGRFGWEEVPDEIDLACIELMKDYFSKDKAWRNKYIKAIKTFDWEFEYNSGTYSGTGNLYVDQLLLPYVINKMVVI |
Ga0194059_10223302 | F056615 | N/A | MYDLADSIMPLFADIYKQFDIQDTDTGSIKKQWQFDRTVSCSAKGIITNSASSRSGDKQIISNKYTNYQSLEIRTSEKLTLREKITNIRDAEGTVIWEELNFPTNTPTVYELMGTTPITDPFGGVIAYNSAVKRSENQIIGQ |
Ga0194059_10223303 | F035307 | GGA | LDNSSLLVTAASGLQKTMVGTKGAILKDSTVAQISAAIYYQADVVSKITTNKQFQARFQSVIFKQLQQDFGLYIDAQARVNPQSLHHVYEWNKVGNSGSRLFKLNITERNGLSFKLGSTFLMSKSPVPNSFGKRKYVFKNKASVMEAGMPVIISPRAAKRLVFETSTGTVYMPIGASVTVTRPGGGKATGRFQIAYARFFTGNLVNLSIKRSGFQQIFNSSLTKAMRLPSEVRKVKYSFSANTLNMQAESAIASAFGGI |
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