Scaffold Ga0194059_1001374

Overview

Basic Information

• Taxon OID: 3300021600
• Scaffold ID: Ga0194059_1001374
• Source Dataset Name: Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Sep2016-L626-11m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10476
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (76.47%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Ontario
• Coordinates
  • Lat. (^o): 49.753
  • Long. (^o): -93.798

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040525	Metagenome / Metatranscriptome	161	Y
F041199	Metagenome / Metatranscriptome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194059_100137412	F040525	AGGCGG	MIIRVALIGSGTPRDPFRCDLPSYSEAITNETTGRAFVTVPAVDVPADVAAFVAAYPTYDLVTPLPVPFPPSLANAWAEHLARQYDLGTAKWHPVVF
Ga0194059_100137416	F041199	N/A	MAAFVTAAQAAASAIQETVDLVAVDGLPEDKYERRALLRFLAGSTSWVPTHCPETGIDLANVDIVAHAQGLWPSHVPSGGMSVEAHQREQALYRAAGVKAPVRR