Scaffold Ga0190354

Basic Information
Taxon OID	3300021590 Open in IMG/M
Scaffold ID	Ga0190354_1000013 Open in IMG/M
Source Dataset Name	Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-13-12-13_MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021590 Open in IMG/M

Scaffold ID

Ga0190354_1000013 Open in IMG/M

Source Dataset Name

Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-13-12-13_MG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	34186
Total Scaffold Genes	72 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	42 (58.33%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

34186

Total Scaffold Genes

72 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

42 (58.33%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Vent Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Vent Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location Name	Mexico: Guaymas Basin
Coordinates	Lat. (^o)	27.0114	Long. (^o)	-110.5956	Alt. (m)	Depth (m)	2011
Location on Map

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Source Dataset Sampling Location

Location Name

Mexico: Guaymas Basin

Coordinates

Lat. (^o)

27.0114

Long. (^o)

-110.5956

Alt. (m)

Depth (m)

2011

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F048033	Metagenome	148	N
F050821	Metagenome	144	N
F057027	Metagenome	136	N
F093027	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0190354_100001345	F057027	AGGAGG	MARKWDRGVFEEARREVEEREKRIGFIFPPKNRGEEIHIEILDDTFTQVYEGETGLDDRTVDWTQPQILVRDLKDDRKKAFKLNSGLATQMWRVVENAGGNPLDMRGSVFTITSMGNYNYEVVYRKPAKEPEIVDESKIEDIVKKVISSGNIPKENVSLWVKEYLKVEGLEVPEAVIESVVNRVVG
Ga0190354_100001346	F050821	GGA	MIVKEMYCNYCKQETFHECQSNELWRCIHCQNTRFEIVNIPRNEIDWEKPVRYLWHSGDIAYVTSALAPDVLRLDEMRELLEGKRIRIPLFKIKDKFLPKYY
Ga0190354_100001365	F048033	AGGAGG	MIVTKLGDMIVVNVDKDNFYCEREGSNLVDIWEEHARYMGEEDMLYVRQVEGEDLSEDMQKLIKNFRNAGKTIEYMDKDRYDAYKGEVHFHTENFENEE
Ga0190354_100001371	F093027	AGGAGG	MKLGILSVLIALVLCIGSVSAFSSIDYIIQASDAVVSVNMKYSNIFENETILGSQVVRLDHMDVTSAGMIMGDDSGVALNNTLRAVPVRNCLISSGMINQNFASAVRTNGSYDFGVTGFRADGRMMDLVSDVQAESGALSHVVRGQVAGSVGMGLTTQTPTNRFESVVRSRSVLQNVMMNANWQMPQPAVEIEVPSSDISSLCVWATQSSYPVFPISA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0190354_1000013

Overview

Ecosystem & Geography

Associated Families

Sequences