Scaffold Ga0190351_1000392

Overview

Basic Information

• Taxon OID: 3300021587
• Scaffold ID: Ga0190351_1000392
• Source Dataset Name: Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-13-9-10_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4501
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (30.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Vent Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location

• Location Name: Mexico: Guaymas Basin
• Coordinates
  • Lat. (^o): 27.0114
  • Long. (^o): -110.5956
  • Depth (m): 2011

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050821	Metagenome	144	N
F057027	Metagenome	136	N
F098395	Metagenome	103	Y
F100149	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0190351_10003921	F100149	N/A	MMYWSKEEEEILKSLWKKPDITAKIIKERHLPHRSINAIQKKASSLGLTKEKIKIDYEKVNEIII
Ga0190351_10003922	F098395	N/A	MKIEVITPLDLEDFVKRIETLEEDNKLHDDLLHDILENIDQIKKHLNGLEKRVEQLESDKELYPEA
Ga0190351_10003927	F057027	AGGAGG	MAKKWDRGVFEEARREVEEREKRIGFLFPPKNRGEEIHIEILDDTFTQVYEGEVGLDDREVGWTQPQILVRDLKDDRKKAFKLNSGLATQMWRVVENAGGDPLNMEGSVFTITSTGNYNYEVVYRKPAKEPEIVDESKIEEIVKKVMSGGNKSKEEIRLWVKEYLKVEGVQVSDVVINSVVDRVAG
Ga0190351_10003928	F050821	GGA	MIVKDMYCDYCKQETLHECQSNEVWRCVQCQNTRFEIINIPQNEIDWEKPVRYLWRLGDIAYVTSTLAPNILRLDEMRELIEGERIRVPIFKIKDKFLPKYY