NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126371_11408123

Scaffold Ga0126371_11408123


Overview

Basic Information
Taxon OID3300021560 Open in IMG/M
Scaffold IDGa0126371_11408123 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)828
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024372Metagenome206Y
F072795Metagenome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0126371_114081231F024372GGAGVRYVEDMRKATLAEFDKEEAEWRETAERQVLHLCEIEDPLPTPDELDDLDPDEAISRIQTVVENNTQLCFAVDGDTRSWGEMAVERIKARA
Ga0126371_114081232F072795GGGGGMKDLGTRIYWFGCVVAATVLGIGVADCWFGHQLTAFLSWAVLASIPWLVGRASLYVLARYPNAPAVKREAEEDWGR

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