NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126371_11240541

Scaffold Ga0126371_11240541


Overview

Basic Information
Taxon OID3300021560 Open in IMG/M
Scaffold IDGa0126371_11240541 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)881
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016189Metagenome / Metatranscriptome249Y
F016894Metagenome / Metatranscriptome244Y

Sequences

Protein IDFamilyRBSSequence
Ga0126371_112405411F016189N/ATIRAEHLAHPCPAHPQTNQGITIGGAPARLLSMQCAPGSGFVVETAVTVHHGTAFVVVSQHQPGTPVHYAADRAAFRKFLAGIRLQR
Ga0126371_112405412F016894AGGAGMRKQDIALALAAAPAVAVLISSCAPAAHKATHSNLTVQCTETLTGQDVTNGGVAGHGHCTITGALHDSGPATDYRTQNGETALIRKVVTGAKGTITFLITIHLGAGGGEPWTITSGTKTYTKLHGRGHQVVDNYTGTPATFVLKGTVSQV
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