NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126371_10519183

Scaffold Ga0126371_10519183


Overview

Basic Information
Taxon OID3300021560 Open in IMG/M
Scaffold IDGa0126371_10519183 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1340
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001529Metagenome / Metatranscriptome677Y
F002246Metagenome / Metatranscriptome578Y
F039901Metagenome / Metatranscriptome162Y

Sequences

Protein IDFamilyRBSSequence
Ga0126371_105191831F002246N/ACWVRNPGDLYAPMSDDDEVLPVTYASHLNMDEAFCSRMCAAIAAGLESAPIGVITTPGTKNPKYVRTELLPLASSLSDKDFV
Ga0126371_105191832F039901AGGAGGMDTPANVARPPEDVVVGTRYIYTLALALVGLALATCAILFLMIDF
Ga0126371_105191833F001529GGAMDRRDRELLDKQMRRLTPPQNEGVIIVMLAAMFLVGMALGSVVSPPKSEPVQIATTMGMGPHG
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