NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126371_10465209

Scaffold Ga0126371_10465209


Overview

Basic Information
Taxon OID3300021560 Open in IMG/M
Scaffold IDGa0126371_10465209 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1411
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004678Metagenome / Metatranscriptome428Y
F007701Metagenome / Metatranscriptome346Y

Sequences

Protein IDFamilyRBSSequence
Ga0126371_104652092F004678AGGAMRKTMLLMALAGAFTMVARAESYSGKLLDAACYDQSKQADSCFATGTTTTFALEASGTVYKLDRTGNTKAAAAIKNRADRTDPAKQQSKEVTAKANGTEKGGTIAVESIEVQ
Ga0126371_104652093F007701N/AIPNLQLEPQPQRKENTLNPKNPIHVILDALAAQQRQGKTPLILRIEPGHIQEAMNALRGLGTLFAPVIPGQTDTAPIYETYERIRQAHKTRPTILLLVECQTIGEFREALDRLPLRNSSEWRDSFNESEWRDFFNDRIG
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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