Scaffold Ga0126371_10104381

Overview

Basic Information

• Taxon OID: 3300021560
• Scaffold ID: Ga0126371_10104381
• Source Dataset Name: Tropical forest soil microbial communities from Panama - MetaG Plot_4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2830
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000242	Metagenome / Metatranscriptome	1480	Y
F024872	Metagenome / Metatranscriptome	204	N
F047779	Metagenome / Metatranscriptome	149	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0126371_101043812	F024872	N/A	MDKLQKTAKELEGMLRSALQKQHGAIIDDLKIRVFRTKADLPDWNAEIVGGERVVEDDVKNTFERDSVELQRQFGLAD
Ga0126371_101043816	F047779	GGAG	MMHRLRRALTAEDRRVARNWAWGVLAVYSACALTIFALASLSQHSANGPKEPAATAVTATADKNQRTR
Ga0126371_101043818	F000242	GGAGG	MCWEIDYKFFAEQKKAQDARIKQEQRAGVIDGLLNQANEQGAKTEVEATPVKEVAPAK