Scaffold Ga0126371_10044087

Overview

Basic Information

• Taxon OID: 3300021560
• Scaffold ID: Ga0126371_10044087
• Source Dataset Name: Tropical forest soil microbial communities from Panama - MetaG Plot_4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4242
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006521	Metagenome / Metatranscriptome	371	Y
F007079	Metagenome / Metatranscriptome	358	Y
F010786	Metagenome	299	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126371_100440873	F007079	N/A	MDPHDVAFPDPSEIAPHAIAFARMMFAHAAFEGEVRSLVDAINPKKPGFGQRLENQWTASESGTGKIIILIKHHRGSNLPQIVQIKNVLNEAIHPCRDRNFLAQGTWCCFNRRSLTIEIRGGARWGQPELPPEHRSYTVSDILKIARKFRDIEAELYRIRRSLEPKMSEAEIRAASSFLRAC
Ga0126371_100440874	F010786	N/A	MRTRGDLLSFAIAFALRGARKLVRGLRQELTEEERYRVADDVVHQLKQHGDPWRLSEEMAPPRKGHST
Ga0126371_100440876	F006521	GAG	MNRDQIKLQRCYSMTPIDGRRTIARVTKLFRITALAAYEDGGTETLELNPVVVRFVWRHAAYPTGWSTRRQQLLLDDFVLAAEKEVTGT