Scaffold Ga0126371_10000645

Overview

Basic Information

• Taxon OID: 3300021560
• Scaffold ID: Ga0126371_10000645
• Source Dataset Name: Tropical forest soil microbial communities from Panama - MetaG Plot_4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29093
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016298	Metagenome / Metatranscriptome	248	Y
F025223	Metagenome / Metatranscriptome	202	Y
F036356	Metagenome / Metatranscriptome	170	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126371_1000064516	F025223	GGAGG	MLMLAKAALGLSAMAAAASAYVFHEGVIRVDVEERRDAGSQVHFWVPATVVSTGMHFMPKERIRHTADKVRPYLPVLREVSKELQKYPEAELLDVTSGSDRVRIAMRGGKLWIDAVSEDGDVVHVSVPAEVLRDVADQLESQAPGV
Ga0126371_1000064527	F016298	AGGAG	LSDPERELVGKRLGFAWKNFEDQQAIIRAADLKAGYLVTFLLFFGASTIPLGKEVLPRLRWATGAEAFASGLYAITYLVFAVGFVWALYLISHVLTPRTARHHAKPSAGKELLYYEHVARYSESAAYYEAITKASLEEMLRSVTDQVYELATICKVKVDSLRAFSQAFKVTLVAWFVSTGAGFWIMTWMK
Ga0126371_1000064528	F036356	GGAGG	MTLHHRTEKSFSRWLGSFLLAFGVILTLANACAAQTKGSQTAGVDNTKMGPYRALAQLAFNASQKGDNATAATLAKILERTWDKSEDYGGDTALAKTNKQLFEEIDKAMDAFVSLLMEHANSTPDAARVRTTYSNYIEKLKLGD