Scaffold Ga0210409

Basic Information
Taxon OID	3300021559 Open in IMG/M
Scaffold ID	Ga0210409_10019068 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0210409_10019068 Open in IMG/M

Source Dataset Name

Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6697
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (55.56%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

6697

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (55.56%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location Name	USA: Massachusetts
Coordinates	Lat. (^o)	42.481016	Long. (^o)	-72.178343	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Massachusetts

Coordinates

Lat. (^o)

42.481016

Long. (^o)

-72.178343

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000624	Metagenome / Metatranscriptome	977	Y
F000703	Metagenome / Metatranscriptome	928	Y
F000781	Metagenome / Metatranscriptome	895	Y
F002853	Metagenome / Metatranscriptome	526	Y
F073888	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210409_100190683	F000781	GGTGG	MLTVAQLAPLKDRDPYLYETLVKIVSSVNATSQRAGVDPSTPAPAPSPIASVSVQASNGWFDISVTDPSEARPGLFYFAESDTTPAFGAPRVYFMGASRNLYVQLGNQTLYWRAYSQYIGSLPSAPVSFGAPPTAVSGGGASGPTPLPSSGSGVFPNGVPRSGNGFGIHPGSRITRQSIL
Ga0210409_100190684	F000703	N/A	MQIRQYQERDLDALRAIHATQGFDYALPDLQNPLFVTKLVLAQHARPSVVGAQHAAPLQQPSTALGDLVEGDSQNADPAPSSDKILGAVLLRLTAEAYLLLDPGAGTPRERWQWLLALQTAAERDAWQRGLEDVHAWLPPPIAHKFGKRIQRLGWLRDDAWTPYCKKLSAGK
Ga0210409_100190685	F002853	GGAGG	MGRGAQSQTRQLTDDQLASLNSLNQQFLGQQQQIGNTLLPQFQSILNNPGLSVADKAAVTGQSQGSLASAFDSLQQSAQNRLARTRNPAGFGELTDELARQKGIAEAGQTQQNQLAFTNTAFQRQMAALQGLSGLFGVDSNLLGRTLGIPAELLNVRNNASRTTGNGFFSALGSGVGSALGALPGAFF
Ga0210409_100190686	F000624	AGGA	MPTHWYAVLTAIFTIGVQFVIFLRWLHRRMRKDEIAHAFIHDIATNHLPHIYNALQQIASRQGIRLDDIPMVRFVDLNDHRRNKR
Ga0210409_100190688	F073888	N/A	MPTRDWIRLAELTAALLLALAVFFSWRADRRDRSQLESELAATKQLLAAADTRQHDRDAQLAQTLATLAAEKRTIVTPAQIIHDLPTQLPLPSPIVLQSAPASPSSPSPKTNAVIPAEDLKPLYDFTIDCKACQSRLTTAQADLTDEHQKTVALTRERDDALRIARGGSILRRITRAAKWFLIGAAAGAIAAKAAH

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0210409_10019068

Overview

Ecosystem & Geography

Associated Families

Sequences