Scaffold Ga0214517_103774

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0214517_103774

Scaffold Ga0214517_103774

Overview

Basic Information
Taxon OID	3300021540 Open in IMG/M
Scaffold ID	Ga0214517_103774 Open in IMG/M
Source Dataset Name	Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Xylan, Gen4, Rep 3, Penicillin and Streptomycin
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1800
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Goat Feces → Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	34.4149	Long. (^o)	-119.841	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F057037	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214517_1037742	F057037	N/A	MIVLEVTDDKFGKIMKAVSEIGKHSECLAAIFEDLSEDSEYSERNNHKRYDDDDMYGSRYGMRRGGRRY

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