Scaffold Ga0194048_10208096

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0194048_10208096

Scaffold Ga0194048_10208096

Overview

Basic Information
Taxon OID	3300021519 Open in IMG/M
Scaffold ID	Ga0194048_10208096 Open in IMG/M
Source Dataset Name	Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L222-5m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	722
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location
Location Name	Canada: Ontario
Coordinates	Lat. (^o)	49.697	Long. (^o)	-93.722	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F053129	Metagenome / Metatranscriptome	141	N
F081035	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194048_102080961	F053129	AGGAG	MATLGSKALTRVVAASQSGFGTAASMTASVGENMFTDAIGIMDLGVTVDLGETTSVGVRTAIQAGRVVITGKNPTVTFSESAASMRTLPIIFDAIGASTTGAGPYTWDWSPTQTDVDTPIFYSLLVGDGVQKYLVTDAIPTEITMSADASGVL
Ga0194048_102080962	F081035	N/A	TVNIVLYALPVPRLDEKYRDLYTWRAWLRDSFNGSVTISGNAAQITISSTTLGQDQYADQDYLTVTATAEVAVYETVAFTA

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